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1
vote
8
replies
3.8k
views
How to filter all column using Loop
loop
filter
written 6.5 years ago by
kritikamish99
▴ 10
3
votes
11
replies
3.5k
views
Filtering on present/absent calls methodology and perfect match only arrays
bioconductor
mas5
perfectmatch
affymetrixchip
filter
updated 9.2 years ago by
James W. MacDonald
65k • written 9.2 years ago by
svlachavas
▴ 830
2
votes
4
replies
3.2k
views
Filtering DGEList object in edgeR
DGElist
filter
edgeR
updated 6.9 years ago by
Gordon Smyth
50k • written 6.9 years ago by
alakatos
▴ 130
2
votes
2
replies
3.1k
views
DESeq: filter out low count reads
deseq
filter
reads
9.3 years ago
ccheung
• 0
0
votes
3
replies
2.7k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
9.2 years ago
alakatos
▴ 130
0
votes
1
reply
1.8k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2
filter
genefilter
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
Björn
• 0
1
vote
1
reply
1.3k
views
how to filter genes in significant module?
RNA
WGCNA
filter
4.9 years ago
modarzi
▴ 10
3
votes
2
replies
1.3k
views
VariantAnnotation package, subseting vcfs on fixed fields
variantannotation
vcf
fixed
filter
9.3 years ago
Anna N.
• 0
4
votes
2
replies
1.3k
views
limma; Only fit list of certain genes/ filter eSet
limma
filter
genelist
differential gene expression
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
bi_Scholar
• 0
0
votes
1
reply
1.3k
views
Inconsistent Subseting using norm2Filter in FlowCore
flowcore
gate
subsetting
filter
updated 8.7 years ago by
Jiang, Mike
★ 1.3k • written 8.7 years ago by
peterfoster
▴ 20
0
votes
1
reply
1.1k
views
How to filter gff based on certain gene list in rtracklayer?
rtracklayer
gff
filter
updated 5.3 years ago by
Michael Lawrence
★ 11k • written 5.3 years ago by
alslonik
• 0
1
vote
1
reply
1.0k
views
filter rows by missing values frequency
missing data
filter
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
rgescudero
• 0
1
vote
2
replies
910
views
Filter by expression and keep probes in limma
R
filter
limma
Normalization
Microarray
13 months ago
Abdul
▴ 20
1
vote
1
reply
779
views
Finding genes that are expressed only in one condition within a contrast
filter
deseq2
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
charles.foster
▴ 160
0
votes
3
replies
698
views
remving pseudogenes and lncRNA from deseq2 res
filter
deseq2
updated 12 months ago by
Michael Love
42k • written 13 months ago by
PD
• 0
0
votes
1
reply
694
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 4.0 years ago by
Jake Wagner
▴ 310 • written 4.1 years ago by
noviello
• 0
0
votes
1
reply
552
views
openCyto's gate_quad_tmix broken when reading from gating template (and a bit more)
filter
gate_quad_tmix
gt_gating
2.2 years ago • updated 2.0 years ago
Pierre
• 0
17 results • Page
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Recent ...
Replies
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
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