Showing : genesetenrichment • reset
8
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14
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3.8k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ★ 1.2k
9
votes
13
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6.8k
views
GSEA many significant gene sets despite no differentially expressed genes
GSEA GeneSetEnrichment DifferentialExpression
updated 3 months ago by ★ 4.1k • written 2.2 years ago by ▴ 30
5
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7
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4.9k
views
Using goseq on non-model organism - how to define genome?
goseq go genesetenrichment
updated 8.4 years ago by 50k • written 8.4 years ago by ▴ 250
4
votes
4
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3.8k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler GO GO enrichment genesetenrichment
updated 8 weeks ago by • 0 • written 6.4 years ago by ▴ 20
1
vote
4
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3.0k
views
Problem retrieving graphics in clusterprofiler
software error clusterprofiler GO genesetenrichment
8.1 years ago • updated 8.0 years ago José Luis Lavín ▴ 10
0
votes
3
replies
1.8k
views
Running the GSEA algorithm
Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ▴ 70
0
votes
2
replies
199
views
How to make GSEAplot with chip set
geneset GeneSetEnrichment msigdb
6 weeks ago Seongsu • 0
2
votes
2
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2.0k
views
Goseq supported organism (felcat5) has an error when testing
goseq genesetenrichment annotation
updated 8.7 years ago by ▴ 310 • written 8.7 years ago by ▴ 20
3
votes
2
replies
1.2k
views
Self-contained gene set testing with DESeq2 results
roast DESeq2 GeneSetEnrichment
updated 3.4 years ago by 50k • written 3.4 years ago by • 0
1
vote
2
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172
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geneList error in clusterprofiler
clusterProfiler GeneSetEnrichment
4 weeks ago Ana • 0
0
votes
2
replies
3.4k
views
What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA GeneSetEnrichment
23 months ago • updated 22 months ago Bhavana • 0
0
votes
1
reply
869
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 10 months ago by 65k • written 10 months ago by • 0
0
votes
1
reply
898
views
enrichment to common gene
GeneSetEnrichment genes genetogo
updated 23 months ago by ▴ 780 • written 23 months ago by • 0
0
votes
1
reply
1.4k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 3.4 years ago by ▴ 30 • written 3.4 years ago by • 0
2
votes
1
reply
1.1k
views
elim method for KEGG pathways?
KEGG genesetenrichment elim
updated 8.5 years ago by 65k • written 8.5 years ago by ▴ 40
0
votes
1
reply
140
views
Gene set enrichment analysis
clusterProfiler GeneSetEnrichment
updated 6 days ago by ★ 4.0k • written 7 days ago by • 0
1
vote
1
reply
5.3k
views
Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 9.3 years ago by ★ 1.6k • written 9.3 years ago by ▴ 150
1
vote
0
replies
1.3k
views
News: Announcing the EnrichmentBrowser 2.0
genesetenrichment functional enrichment enrichmentbrowser News
8.3 years ago Ludwig Geistlinger ▴ 70
1
vote
0
replies
1.1k
views
performance of limma gene set analysis in relation to Tarca et al. (2013)
limma genesetenrichment
updated 8.2 years ago by ★ 13k • written 8.2 years ago by ▴ 160
0
votes
0
replies
574
views
Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
3.5 years ago paun_bio • 0
0
votes
0
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344
views
BubbleGUM for multi group comparison of gene set enrichment
RNASeqData GeneSetEnrichment multiGSEA
10 months ago sonal • 0
1
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0
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1.4k
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler KEGG GeneSetEnrichment
2.6 years ago makrez ▴ 10
0
votes
0
replies
1.1k
views
Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
9.4 years ago Peter.Wood • 0
0
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0
replies
1.7k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.5 years ago Guangchuang Yu ★ 1.2k
24 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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