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genetics
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17k
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1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
14.0 years ago
David Lyon
▴ 340
0
votes
4
replies
13k
views
Normalization by DEseq
Genetics
Normalization
DESeq
Genetics
Normalization
DESeq
updated 6.2 years ago by
diannedai
• 0 • written 13.6 years ago by
Rui Luo
▴ 20
2
votes
7
replies
5.0k
views
Extend GRanges start/end
Genetics
GenomicFeatures
Genetics
GenomicFeatures
updated 11.6 years ago by
Michael Lawrence
★ 11k • written 11.6 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
2
replies
4.9k
views
GeneticsPed Pedigree object creation error: recursive indexing failed at level 2
Genetics
GeneticsPed
Genetics
GeneticsPed
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
Liz Hare
▴ 30
0
votes
0
replies
4.1k
views
Bioconductor 2.13 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
miRNA
Microarray
Genetics
Proteomics
Coverage
10.6 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
3.9k
views
ComBat
Transcription
Genetics
Pathways
Network
Survival
Cancer
Breast
Colon
Kidney
Leukemia
HIV
11.6 years ago
SSc Array Core
▴ 10
0
votes
1
reply
3.8k
views
DESeq2 - factor base level changes the DE genes.
RNASeq
Genetics
DESeq2
RNASeq
Genetics
DESeq2
updated 9.6 years ago by
Michael Love
42k • written 9.9 years ago by
Guest User
★ 13k
0
votes
1
reply
3.5k
views
problems generating a gene2GOlist in topGO
Genetics
Annotation
GO
hgu95av2
convert
biomaRt
topGO
Genetics
Annotation
GO
hgu95av2
updated 12.2 years ago by
Adrian Alexa
▴ 400 • written 12.2 years ago by
António Miguel de Jesus Domingues
▴ 510
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray
Genetics
limma
limmaGUI
Microarray
Genetics
limma
limmaGUI
updated 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.1 years ago by
Gordon Smyth
50k
1
vote
12
replies
3.4k
views
Problem running summarizeOverlaps()
Genetics
Genetics
updated 8.3 years ago by
shania90.lk
▴ 10 • written 10.0 years ago by
Jessica Perry Hekman
▴ 140
0
votes
0
replies
3.1k
views
Bioconductor 2.11 is released
BiocViews
SNP
Transcription
Sequencing
miRNA
Microbiome
Microarray
qPCR
Genetics
Coverage
11.6 years ago
Dan Tenenbaum
★ 8.2k
0
votes
8
replies
2.8k
views
Expected number of DE genes?
Genetics
edgeR
DESeq2
Genetics
edgeR
DESeq2
updated 9.8 years ago by
Thomas Hampton
▴ 750 • written 9.8 years ago by
Jessica Perry Hekman
▴ 140
0
votes
1
reply
2.8k
views
BIRD 2008
Genetics
Pathways
Cancer
PROcess
microRNA
a4
Genetics
Pathways
Cancer
PROcess
microRNA
16.6 years ago • updated 16.5 years ago
Prof. Roland Wagner
▴ 100
0
votes
1
reply
2.8k
views
cause 'memory not mapped'
Microarray
Genetics
Normalization
affy
Microarray
Genetics
Normalization
affy
updated 12.9 years ago by
Paul Geeleher
★ 1.3k • written 12.9 years ago by
Won Cheol Yim
▴ 10
0
votes
3
replies
2.7k
views
Outlier detection in DEseq
Genetics
DESeq
Genetics
DESeq
updated 13.6 years ago by
Simon Anders
★ 3.7k • written 13.6 years ago by
Rui Luo
▴ 20
0
votes
0
replies
2.5k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics
Metabolomics
Pathways
Cancer
Genetics
Metabolomics
Pathways
Cancer
12.7 years ago
Emilie Bard
▴ 10
0
votes
5
replies
2.4k
views
mRNA-seq cross-species analysis, is it possible?
Genetics
Normalization
Proteome
DESeq
Genetics
Normalization
Proteome
DESeq
updated 12.8 years ago by
Davis McCarthy
▴ 20 • written 12.8 years ago by
mali salmon
▴ 370
0
votes
1
reply
2.4k
views
forward conditional Cox and logistic regression
Genetics
Regression
Survival
Genetics
Regression
Survival
updated 15.5 years ago by
Laurent Gautier
★ 2.3k • written 15.5 years ago by
Katleen De Preter
▴ 130
0
votes
2
replies
2.3k
views
Possible bug in sva package regarding ComBat and use of numCovs
Genetics
sva
Genetics
sva
updated 12.3 years ago by
Jeff Leek
▴ 650 • written 12.3 years ago by
Djie Tjwan Thung
▴ 90
3
votes
5
replies
2.3k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease
genetics
micro array data
microarray
updated 9.1 years ago by
Gordon Smyth
50k • written 9.1 years ago by
pankajnarula84
▴ 20
0
votes
2
replies
2.3k
views
limma, spot and technical replicates
Genetics
limma
limmaGUI
Genetics
limma
limmaGUI
updated 18.5 years ago by
STKH Steen Krogsgaard
▴ 150 • written 18.5 years ago by
Cecilia McGregor
▴ 110
0
votes
12
replies
2.3k
views
Biomart server down?
Genetics
Cancer
biomaRt
Genetics
Cancer
biomaRt
updated 13.0 years ago by
Rhoda Kinsella
▴ 660 • written 13.0 years ago by
Alistair Rust
▴ 20
0
votes
0
replies
2.2k
views
SRAdb package - problems
Genetics
SRAdb
Genetics
SRAdb
10.9 years ago
Jack Zhu
▴ 170
2
votes
0
replies
2.2k
views
Job:
Job Opening: Computational Biologist @ Genentech Bioinformatics
Job
Sequencing
Genetics
Cancer
updated 9.7 years ago by
Dan Tenenbaum
★ 8.2k • written 9.7 years ago by
Michael Lawrence
★ 11k
0
votes
0
replies
2.2k
views
Two bioinformatics positions in Bordeaux, France
SNP
Sequencing
Genetics
Cancer
Breast
SNP
Sequencing
Genetics
Cancer
Breast
14.0 years ago
Audrey Kauffmann
▴ 110
0
votes
0
replies
2.2k
views
Plot exon number per gene and transcript lengths
Genetics
TranscriptDb
GenomicFeatures
9.7 years ago
Jon Bråte
▴ 250
0
votes
0
replies
2.1k
views
Job:
Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics
genetics
proteomics
rnaseq
microarray
Job
9.2 years ago
Feng Hong
• 0
1
vote
3
replies
2.1k
views
Gene ID Duplicates
deseq2
genetics
Tutorial
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
anokhi1997
• 0
0
votes
5
replies
2.1k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 13.7 years ago by
Alex Levitchi
▴ 30 • written 13.7 years ago by
Sean Davis
21k
0
votes
3
replies
2.1k
views
Error running makeTranscriptDbFromGFF in GenomicFeatures
Genetics
TranscriptDb
GenomicFeatures
updated 9.7 years ago by
Michael Lawrence
★ 11k • written 9.7 years ago by
Jon Bråte
▴ 250
0
votes
9
replies
2.0k
views
Encrypting IDAT files using IDATreader
Genetics
Genetics
updated 11.7 years ago by
Mike Smith
★ 6.5k • written 11.7 years ago by
Yoo, Seungyeul
▴ 110
1
vote
0
replies
2.0k
views
Job:
Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening
interactions
genetics
jobs
image analysis
Job
9.1 years ago
Bernd Fischer
▴ 550
0
votes
0
replies
2.0k
views
voom and RPKM for multi-species RNA-seq analysis
Genetics
DESeq
Genetics
DESeq
11.0 years ago
Julien Roux
▴ 90
0
votes
2
replies
2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics
GO
Regression
Cancer
TranscriptDb
Genetics
GO
Regression
Cancer
TranscriptDb
updated 10.0 years ago by
Tarca, Adi
▴ 570 • written 10.0 years ago by
Hervé Pagès
16k
0
votes
1
reply
2.0k
views
estimateDispersions in DESeq
Genetics
graph
DESeq
Genetics
graph
DESeq
updated 11.9 years ago by
Wolfgang Huber
★ 13k • written 11.9 years ago by
Flavia Nunes
▴ 10
2
votes
0
replies
2.0k
views
Job:
23andMe Job Opportunities
bioinformatician job
bioinformatics scientist
genetics
Job
9.0 years ago
rgentleman
★ 5.5k
0
votes
0
replies
1.9k
views
Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics
HIV
Genetics
HIV
17.5 years ago
Adrian Alexa
▴ 400
0
votes
0
replies
1.9k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
genomics
NGS
R
genetics
statistics
5.9 years ago • updated 3.5 years ago
Luo Weijun
★ 1.6k
0
votes
4
replies
1.8k
views
DexSeq extracols option
RNASeq
Microarray
Genetics
Annotation
Normalization
Infrastructure
Cancer
probe
limma
updated 10.8 years ago by
Alejandro Reyes
★ 1.9k • written 10.8 years ago by
Ioannis Vlachos
▴ 40
0
votes
0
replies
1.8k
views
Postdoctoral positions at Harvard
Genetics
Cancer
Yeast
Genetics
Cancer
Yeast
13.8 years ago
Edo Airoldi
▴ 10
0
votes
0
replies
1.7k
views
Job:
Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer
sequencing
genetics
genomes
diagnostic
Job
7.7 years ago
dtlabmskcc
• 0
0
votes
4
replies
1.7k
views
allen brain atlas
Genetics
Annotation
BRAIN
Genetics
Annotation
BRAIN
updated 15.7 years ago by
Martin Morgan
25k • written 15.8 years ago by
Radek Blatny
▴ 60
0
votes
0
replies
1.7k
views
Deferential gene expression databases
Microarray
Genetics
Annotation
Normalization
Pathways
GO
Cancer
BSgenome
probe
annotate
12.3 years ago
saikouy bah
▴ 30
0
votes
1
reply
1.7k
views
limma: percent of variance explained
Genetics
limma
Genetics
limma
updated 10.0 years ago by
Gordon Smyth
50k • written 10.0 years ago by
Julien Roux
▴ 90
0
votes
3
replies
1.7k
views
RMA + loess normalisation and filtering
Genetics
Normalization
Genetics
Normalization
updated 19.1 years ago by
Wolfgang Huber
★ 13k • written 19.1 years ago by
Katleen De Preter
▴ 130
0
votes
7
replies
1.7k
views
Seeking assistance on ROC
Genetics
ROC
Genetics
ROC
14.3 years ago
Susan Bosco
▴ 80
0
votes
0
replies
1.7k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP
Genetics
Pathways
Cancer
CGH
microRNA
SNP
Genetics
Pathways
Cancer
CGH
microRNA
15.6 years ago
Florian Markowetz
▴ 20
0
votes
0
replies
1.7k
views
Postdoctoral positions at EMBL
Sequencing
Genetics
GO
Network
Cancer
genomes
Sequencing
Genetics
GO
Network
Cancer
12.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.7k
views
BIRD 2008 Conference
Genetics
Pathways
Cancer
microRNA
Genetics
Pathways
Cancer
microRNA
16.4 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.7k
views
Bioinformatician Job at Pirbright Institute
Genetics
Infrastructure
Genetics
Infrastructure
11.4 years ago
Jan T Kim
▴ 50
50 results • Page
1 of 1
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
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Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
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Koen Van den Berge
▴ 180
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shepherl
3.9k
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