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Showing :
getBm
•
reset
1
vote
8
replies
9.3k
views
BioMart: curl option when using getBM in loop
curl
biomart
getBM
Tutorial
updated 4.1 years ago by
James W. MacDonald
65k • written 4.1 years ago by
Ni-Ar
▴ 10
6
votes
12
replies
5.3k
views
Error in getBM of biomaRt package
biomaRt
getBM
updated 7.1 years ago by
boris.steipe
• 0 • written 7.3 years ago by
rubi
▴ 110
4
votes
9
replies
3.7k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt
error
getBM
updated 2.9 years ago by
Mike Smith
★ 6.5k • written 3.2 years ago by
Zen
▴ 20
1
vote
8
replies
2.3k
views
BiomaRt package not working
biomart
getbm
7.0 years ago
Didi
▴ 10
3
votes
3
replies
2.0k
views
getBM function, search for annotation characteristics with entrezgene filters --> result with duplicates
getBM
entrez gene identifiers
duplicate
rnaseq
7.3 years ago
Jose Luis Soto Vázquez
• 0
0
votes
1
reply
1.9k
views
biomaRt getBM() problem
biomaRt
getBM
updated 9.0 years ago by
Thomas Maurel
▴ 800 • written 9.0 years ago by
dhondalay
• 0
0
votes
2
replies
1.9k
views
seemingly erratic responses to different getBM biomaRt requests depending on the attributes requested
getbm
biomart
updated 8.4 years ago by
Thomas Maurel
▴ 800 • written 8.4 years ago by
efoss
▴ 10
0
votes
4
replies
1.9k
views
biomaRT getBM error
biomart
getbm
ensembl
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
scanchi
• 0
0
votes
4
replies
1.6k
views
Question: error in Bioconductor getBM
biomaRt
getBM
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
nitandressa
• 0
0
votes
2
replies
1.6k
views
How to use gene_flank on getBM()
getBm
gene_flank
upstream_flank
8.9 years ago
kris.petrini
• 0
1
vote
3
replies
1.6k
views
Scan error using biomart getBM with version option and host set
biomart
ensembl
getbm
5.0 years ago
Marc Saric
▴ 70
0
votes
5
replies
1.6k
views
biomaRt getBM() returns nothing most of the times
biomaRt
getBM
updated 4.1 years ago by
swbarnes2
★ 1.3k • written 4.1 years ago by
laurenz.holcik
• 0
1
vote
1
reply
1.5k
views
Error in curl; timeout when using biomaRt
biomaRt
curl
timeout
getBM
Bioconductor
updated 2.7 years ago by
swbarnes2
★ 1.3k • written 2.7 years ago by
nlin0907
• 0
2
votes
2
replies
1.5k
views
BiomaRt returns 0 obs
biomart
getbm
ensembl
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
edelman
• 0
0
votes
4
replies
1.5k
views
[biomaRt] getBM: Error when obtaining mim_morbid_description
biomart
getbm
error
9.2 years ago
Tibor Fulop
• 0
0
votes
3
replies
1.5k
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 2.3 years ago by
Mike Smith
★ 6.5k • written 2.3 years ago by
Ariel Simon
• 0
3
votes
4
replies
1.4k
views
BioMart : Error in getBM, the BioMart webservice returned an invalid result
BioMart
getBM
webservice
updated 4.9 years ago by
Mike Smith
★ 6.5k • written 4.9 years ago by
amandinelecerfdefer
▴ 20
1
vote
0
replies
1.3k
views
biomaRt getBM returns allele as logical instead of character
biomart
getBM
logical
error
8.3 years ago
Christian Ruckert
▴ 170
1
vote
1
reply
1.2k
views
Agilent BiomaRT getBM unavailable filter value
biomaRT
getBM
new version
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
u.seemab
• 0
1
vote
1
reply
1.2k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl
transcripts
getbm
biomart
6.3 years ago
hihi.joshi
• 0
0
votes
4
replies
1.1k
views
retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart
mart
getbm
updated 5.8 years ago by
James W. MacDonald
65k • written 5.8 years ago by
cagenet34
▴ 20
0
votes
2
replies
1.1k
views
Difference between biomart R and biomart website GO query
biomart
ensemblbiomart
go
getbm
updated 6.1 years ago by
Mike Smith
★ 6.5k • written 6.1 years ago by
daniel.gaffney
▴ 20
0
votes
2
replies
1.1k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
6.2 years ago
lluex.rova
• 0
0
votes
0
replies
1.1k
views
Missing/inconsistent data with BiomaRt getBM() query
biomart
getBM
8.6 years ago
yg246
• 0
0
votes
0
replies
1.0k
views
Unclear error in getBM() with attributes and output
getBM
software error
8.9 years ago
kris.petrini
• 0
2
votes
2
replies
985
views
How to retrieve attributes from a certain feature page using biomaRt
biomaRt
getBM
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
georgewwp
• 0
0
votes
3
replies
882
views
Error in getBM() for Phytozome
biomaRt
getBM
Phytozome
Chlamydomonas
updated 4.1 years ago by
Mike Smith
★ 6.5k • written 4.1 years ago by
ytlin610
▴ 10
0
votes
2
replies
861
views
Error in biomaRt
biomaRt
getBM
updated 5.1 years ago by
Mike Smith
★ 6.5k • written 5.1 years ago by
angelica.lindlof
• 0
0
votes
3
replies
838
views
Hello ! does anybody failed to convert id using getBM in biomaRt package?
biomaRt
getBM
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
YinCY
▴ 20
0
votes
1
reply
718
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
ai.yaku
• 0
30 results • Page
1 of 1
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Replies
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
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