Showing : gosemsim • reset
0
votes
1
reply
390
views
GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
1
vote
1
reply
629
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 14 months ago by ▴ 730 • written 14 months ago by ▴ 10
0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress GO.db GOSemSim
17 months ago Chruut • 0
0
votes
0
replies
672
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.2 years ago Amandeep • 0
0
votes
3
replies
1.7k
views
using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 2.2 years ago by 50k • written 2.2 years ago by ▴ 90
0
votes
1
reply
1.1k
views
is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 3.6 years ago by 6.7k • written 3.6 years ago by • 0
0
votes
1
reply
990
views
GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 3.8 years ago by 65k • written 3.8 years ago by • 0
0
votes
1
reply
1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
3.9 years ago Jenny Drnevich ★ 2.0k
1
vote
1
reply
1.3k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
1
vote
3
replies
1.1k
views
Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
4.8 years ago helenlong1 • 0
0
votes
1
reply
816
views
Using GoSemSim with other Ontologies
GOSemSim
updated 4.8 years ago by ▴ 730 • written 4.8 years ago by • 0
3
votes
12
replies
2.5k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.1 years ago sergi.picart ▴ 20
0
votes
1
reply
931
views
Gene similarity by GOSemSim
gosemsim mgenesim
5.3 years ago athirak1986 • 0
0
votes
0
replies
991
views
GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
5.4 years ago nooshin ▴ 300
0
votes
2
replies
1.2k
views
(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 5.4 years ago by ★ 1.2k • written 5.4 years ago by • 0
2
votes
2
replies
1.8k
views
Error: could not find function "godata"
gosemsim
5.8 years ago anton.kratz ▴ 60
0
votes
1
reply
1.1k
views
GO similarity by GOSemSim
gosemsim similarity
5.9 years ago ahatashkar • 0
8
votes
5
replies
2.3k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 6.2 years ago by • 0 • written 6.2 years ago by ▴ 60
0
votes
1
reply
1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.1 years ago by ▴ 730 • written 8.6 years ago by ▴ 10
1
vote
12
replies
3.3k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ▴ 10
0
votes
5
replies
1.5k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by ▴ 10
0
votes
4
replies
1.4k
views
problem of GOSemSim R package operation geneSim()
gosemsim
8.0 years ago bnembarekmarwa • 0
1
vote
1
reply
1.2k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 8.0 years ago by ★ 1.2k • written 8.0 years ago by • 0
0
votes
9
replies
2.9k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 8.8 years ago by ▴ 10 • written 9.0 years ago by • 0
0
votes
4
replies
1.9k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
9.0 years ago cpcantalapiedra • 0
1
vote
2
replies
1.8k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 10
0
votes
0
replies
1.7k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.4 years ago Guangchuang Yu ★ 1.2k
0
votes
1
reply
1.5k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 10.4 years ago by ★ 1.2k • written 10.4 years ago by ★ 13k
0
votes
0
replies
1.2k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.6 years ago Guangchuang Yu ★ 1.2k
0
votes
0
replies
910
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.7 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 11.8 years ago by ★ 1.2k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.1k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 11.9 years ago by ★ 8.2k • written 11.9 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 20
33 results • Page 1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
INDIA, 24 minutes ago
France, 46 minutes ago
United States, 59 minutes ago
Australia, 1 hour ago
Singapore, 2 hours ago
Traffic: 695 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6