Showing : gwas • reset
0
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4
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1.4k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.7 years ago Weiqiong • 0
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1.1k
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
3.4 years ago Sarah • 0
0
votes
0
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1.2k
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
3.4 years ago helene.ruffieux • 0
0
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0
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1.0k
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
3.7 years ago helene.ruffieux • 0
0
votes
1
reply
1.1k
views
gwas power calculation for quantitative traits
power GWAS
written 4.2 years ago by • 0
1
vote
2
replies
5.5k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.8 years ago by • 0 • written 5.9 years ago by • 0
0
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0
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1.4k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.6 years ago jiyeon.choi2 • 0
0
votes
3
replies
1.7k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by • 0
0
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0
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1.1k
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.8 years ago pwjeffries • 0
0
votes
1
reply
1.3k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.8 years ago naglemi ▴ 10
1
vote
1
reply
1.4k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 7.0 years ago by ▴ 70 • written 7.0 years ago by ▴ 10
0
votes
1
reply
1.4k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.1 years ago by ▴ 30 • written 7.1 years ago by ▴ 10
0
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0
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1.2k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.2 years ago zhu • 0
0
votes
3
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1.7k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 10
3
votes
4
replies
2.0k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 10
0
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1
reply
1.3k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.4 years ago GENOMIC_region • 0
0
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0
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1.3k
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Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
8.3 years ago IV ▴ 30
2
votes
0
replies
1.8k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
9.4 years ago enridomenici ▴ 10
0
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0
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1.5k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
10.3 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
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