Showing : gwas • reset
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4
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1.0k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
20 months ago Weiqiong • 0
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890
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.4 years ago Sarah • 0
0
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0
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905
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
2.4 years ago helene.ruffieux • 0
0
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0
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842
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
2.7 years ago helene.ruffieux • 0
0
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1
reply
819
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gwas power calculation for quantitative traits
power GWAS
written 3.2 years ago by • 0
1
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2
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4.7k
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Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.8 years ago by • 0 • written 4.9 years ago by • 0
0
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1.1k
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Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
4.6 years ago jiyeon.choi2 • 0
0
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3
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1.4k
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GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.3 years ago by ▴ 70 • written 5.3 years ago by • 0
0
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0
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865
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
5.8 years ago pwjeffries • 0
0
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1
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1.1k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.8 years ago naglemi ▴ 10
1
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1
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1.1k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.0 years ago by ▴ 70 • written 6.0 years ago by ▴ 10
0
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1
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1.2k
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.1 years ago by ▴ 30 • written 6.1 years ago by ▴ 10
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0
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1.0k
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.2 years ago zhu • 0
0
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3
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1.4k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by ▴ 10
3
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4
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1.7k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by ▴ 10
0
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1
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1.1k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.4 years ago GENOMIC_region • 0
0
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0
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1.2k
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Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
7.3 years ago IV ▴ 30
2
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0
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1.5k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.4 years ago enridomenici ▴ 10
0
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0
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1.3k
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News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
9.3 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open! by Esperan • 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0
Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…
Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k
I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …
Votes
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
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