Showing : htqpcr • reset
1
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5
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1.1k
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Manual creation of qPCRset does not work
bug nondetects HTqPCR
updated 23 months ago by • 0 • written 24 months ago by ▴ 230
0
votes
3
replies
820
views
Technical Replicates in HTqPCR
HTqPCR
written 24 months ago by ▴ 230
0
votes
0
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1.0k
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster qpcr qpcrNorm clusterProfiler HTqPCR
2.9 years ago Javier • 0
0
votes
0
replies
869
views
Made a pDATA manually for HTqPCR procedure
HTqPCR phenoData esetVis pData
3.9 years ago Marcelo Laia ▴ 450
0
votes
0
replies
741
views
Error when reading qPCR data in SDS format
HTqPCR
4.5 years ago Nghia • 0
1
vote
1
reply
1.6k
views
HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 4.6 years ago by 53k • written 9.8 years ago by ▴ 40
3
votes
4
replies
4.5k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 3.9 years ago by ▴ 380 • written 4.6 years ago by ▴ 680
0
votes
0
replies
740
views
Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
5.2 years ago Maximilian Fuchs • 0
0
votes
0
replies
735
views
HTqPCR package, filterCategory function
HTqPCR filterCategory setCategory
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
0
votes
0
replies
1.0k
views
Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
6.1 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
874
views
Analyze ct data using HTqPCR
HTqPCR R NormqPCR
6.2 years ago annesha • 0
0
votes
0
replies
763
views
Error with HTqPCR rbind
HTqPCR
6.3 years ago NAIARA GARCÍA ▴ 10
0
votes
1
reply
1.1k
views
HTqPCR: dealing with technical replicates (filterCategory) and inability to analyze datasets with filtered genes (limmaCtData).
limma htqpcr
updated 4.7 years ago by • 0 • written 6.7 years ago by • 0
0
votes
0
replies
878
views
A problem about changeCtLayout in HTqPCR
htqpcr
6.7 years ago tropicalis • 0
0
votes
3
replies
1.3k
views
Creation of qPCRset in R for HtqPCR
R bioconductor htqpcr qpcrset object
6.9 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
1.0k
views
Creating qPCRset object from Bio-Rad CFX file
htqpcr limma
7.0 years ago dbars • 0
0
votes
0
replies
1.1k
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
7.1 years ago jirkanov • 0
0
votes
0
replies
1.1k
views
Inter-run calibration in HTqPCR R package
htqpcr R
7.3 years ago dbarscortina • 0
0
votes
0
replies
1.2k
views
Import problem with HTqPCR Fluidigm 96.96
htqpcr bioconductor fluidigm biomark
7.6 years ago reed27 • 0
0
votes
0
replies
1.1k
views
HTqPCR for Fluidigm Results
htqpcr fluidigm
7.6 years ago rhonce • 0
0
votes
0
replies
1.1k
views
HTqPCR trouble with changeCtLayout
htqpcr qPCR
7.6 years ago samantha_jeschonek • 0
2
votes
2
replies
1.5k
views
Reading in delta Ct values using HTqPCR
htqpcr
updated 7.6 years ago by 53k • written 7.6 years ago by ▴ 10
0
votes
0
replies
940
views
Bugs in HTqPCR 1.30.0?
htqpcr
7.8 years ago h.roest • 0
1
vote
2
replies
1.7k
views
No differential expression with limmaCtData possible
limma htqpcr
7.8 years ago h.roest • 0
0
votes
0
replies
935
views
HTqPCR package: problems with the limmaCtData function
htqpcr
8.2 years ago Frederico Moraes Ferreira ▴ 100
0
votes
1
reply
1.2k
views
Problem duplicated samples for ChangeCtLayout in HTqPCR with fluidigm 96*96
htqpcr
8.4 years ago carine.genet • 0
0
votes
0
replies
1.1k
views
re-format data for HtqPCR
HtqPCR reshape
8.6 years ago Stefany Solano • 0
0
votes
1
reply
1.4k
views
HTqPCR cannot read more recent SDS files
htqpcr
updated 8.6 years ago by • 0 • written 8.6 years ago by ▴ 40
0
votes
3
replies
1.6k
views
HTqPCR does not copy featureData when subsetting a qPCRset
htqpcr
updated 8.6 years ago by • 0 • written 8.6 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Batch Correction in HTqPCR?
qPCR htqpcr
8.6 years ago bradley • 0
3
votes
1
reply
1.7k
views
Errors with HTqPCR v1.28.0 and BioC 3.4
HTqPCR
updated 8.6 years ago by ▴ 40 • written 8.9 years ago by ▴ 20
0
votes
1
reply
1.5k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR htqpcr subsetting
updated 8.6 years ago by ▴ 40 • written 8.8 years ago by ★ 4.1k
3
votes
7
replies
2.6k
views
Subsetting qPCRset loses sample names, possibly due to change of assayDataElementReplace
HTqPCR
8.6 years ago henrik.seidel ▴ 40
0
votes
0
replies
1.0k
views
HTqPCR - Multiple plates for multiple samples
htqpcr
9.0 years ago Angela LR • 0
0
votes
0
replies
1.2k
views
HTqPCR limma decide test issue?
limma decide test HTqPCR
9.0 years ago polemiraza ▴ 70
0
votes
1
reply
1.6k
views
Possible bug in setCategory function from HTqPCR package
htqpcr HTqPCR
updated 9.0 years ago by • 0 • written 10.8 years ago by ▴ 830
0
votes
0
replies
968
views
setCategory flag and flag.pout argument problems
htqpcr
9.0 years ago h.roest • 0
0
votes
0
replies
1.3k
views
Combining TLDA cards for normalization
normalization microrna htqpcr
9.1 years ago jamie_jabalee • 0
1
vote
0
replies
2.2k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR readCtData Heidi Dvinge
9.4 years ago virginia.claudio ▴ 10
0
votes
0
replies
1.3k
views
Error in readCtData
htqpcr readctdata connection readlines
9.4 years ago lizhensor • 0
0
votes
0
replies
1.1k
views
Help with loading Data and reading Ct values
htqpcr
9.5 years ago Pheebz • 0
0
votes
0
replies
1.1k
views
error in reading files using HTqPCR
htqpcr
11.9 years ago • updated 9.7 years ago Alex ▴ 10
0
votes
1
reply
1.4k
views
featureNames converted to numbers in limmaCtData
limma htqpcr
10.1 years ago julio.c.silver • 0
1
vote
7
replies
2.1k
views
limmaCTData Error requires ndups=2 even when there are no duplicate genes (should be ndups=1)
limma ndups htqpcr software error
updated 10.1 years ago by 53k • written 10.1 years ago by • 0
0
votes
0
replies
1.8k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
10.4 years ago H.H. • 0
0
votes
2
replies
1.6k
views
HTqPCR + setting flags as unreliable problem
htqpcr flags setCategory
10.8 years ago samantha.smith-4 • 0
0
votes
0
replies
1.2k
views
Bugs in HTqPCR implementation of data normalization
Normalization HTqPCR Normalization HTqPCR
11.2 years ago Peter Langfelder ★ 3.0k
0
votes
0
replies
2.4k
views
reading qRT-PCR data
ddCt HTqPCR ReadqPCR ddCt HTqPCR ReadqPCR
11.4 years ago Guest User ★ 13k
0
votes
5
replies
1.9k
views
Reading in mutiple files using readCtData
HTqPCR HTqPCR
updated 11.6 years ago by 68k • written 11.6 years ago by ▴ 50
2
votes
1
reply
1.6k
views
HTqPCR- gene names not maintained in limmaCtData
annotate ddCt HTqPCR annotate ddCt HTqPCR
11.6 years ago Cornwell, Adam ▴ 110
134 results • Page 1 of 3
Recent ...
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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k
It may not be that common for bulk RNA-Seq, but in my experience it's very common for bulk miRNA-Seq.
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Nice. That's great to hear. `sva` was actually the next step I was planning to try. My colleagues haven't seen this kind of pattern before …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k
It is not uncommon for library size to be apparent in an MDS plot. You can use `sva` or `RUV` to account for that.
Comment: p-adjusted values in multiple comparisons by Josh • 0
Yes, using lmFit with block and duplicateCorrelation is appropriate; mobile data collection can illustrate blocking importance. First estim…
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Understood, thanks. The issue I'm seeing is that even after normalization, the MDSplot still orders samples by library size. I suspect cell…
Votes
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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