Bioconductor Idat

Showing : idat • reset

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2.2k

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idat illumina limma read.idat

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by bastien_chassagnol • 0

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4.7k

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minfi methylation idat samplesheet

updated 4.4 years ago by sci_djw • 0 • written 6.3 years ago by researcher • 0

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6.4k

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minfi read.metharray.exp idat HM450k

7.9 years ago poojitha.stemcell ▴ 10

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2.4k

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gwastools idat gds format

updated 8.1 years ago by Stephanie M. Gogarten ▴ 890 • written 8.1 years ago by catbriggsm • 0

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2.1k

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limma illuminaio idat gzip

updated 8.3 years ago by Matthew Ritchie ▴ 1000 • written 8.3 years ago by Guido Hooiveld ★ 4.1k

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2.8k

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methylation illumina EPIC methylationepic idat

updated 8.3 years ago by Guido Hooiveld ★ 4.1k • written 8.3 years ago by Ellen O • 0

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2.6k

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minfi idat annotation EPIC

updated 8.5 years ago by xue.zhang • 0 • written 8.5 years ago by Frocha ▴ 20

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12k

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microarray illumina idat

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by kritikamish99 ▴ 10

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2.9k

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lumidat idat microarray illumina

updated 10.0 years ago by Mark Cowley ▴ 400 • written 10.0 years ago by willj ▴ 30

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2.9k

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illuminaio idat beadarray

updated 10.0 years ago by Mike Smith ★ 6.6k • written 10.0 years ago by willj ▴ 30

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2.4k

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crlmm idat

updated 10.2 years ago by Matthew Ritchie ▴ 1000 • written 10.2 years ago by Shi, Tao ▴ 720

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2.8k

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illuminaio idat

10.5 years ago lacion • 0

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7.2k

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beadarray lumi illuminaio idat

updated 3.7 years ago by Gordon Smyth 52k • written 11.8 years ago by Sean Davis 21k

13 results • Page 1 of 1

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Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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