Showing : methyAnalysis • reset
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.4 years ago coobzie • 0
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 6.3 years ago by ★ 1.3k • written 6.3 years ago by • 0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
7.2 years ago mcahn • 0
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4
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
7.2 years ago topijush ▴ 10
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.4 years ago charleneee95 • 0
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4.4k
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 2.9 years ago by 21k • written 8.1 years ago by • 0
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.5 years ago Shicheng Guo • 0
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1.1k
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problem with identifySigDMR command
methyAnalysis
8.7 years ago yuping.zhang • 0
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1.9k
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methyAnalysis error with example data
methyanalysis
8.9 years ago Tom ▴ 10
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10
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5.2k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 9.1 years ago by ▴ 750 • written 9.1 years ago by ▴ 60
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2.7k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.5 years ago jdangelo • 0
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4.7k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 10.1 years ago by ▴ 80 • written 10.1 years ago by ▴ 370
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1.6k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 10.1 years ago by ▴ 80 • written 10.1 years ago by ▴ 370
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
11.1 years ago Allegra Petti ▴ 120
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2.7k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 11.1 years ago by ▴ 160 • written 11.1 years ago by ★ 13k
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6
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3.4k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 11.1 years ago by 68k • written 11.1 years ago by ★ 13k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.1 years ago Ed Schwalbe ▴ 20
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 12.1 years ago by ▴ 440 • written 12.1 years ago by ▴ 20
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 12.2 years ago by ▴ 440 • written 12.2 years ago by ★ 13k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 12.2 years ago by 21k • written 12.2 years ago by ▴ 10
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1.3k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
12.3 years ago Pan Du ▴ 440
21 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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