Showing : methyAnalysis • reset
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.1 years ago coobzie • 0
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2
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1.6k
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 6.0 years ago by ★ 1.3k • written 6.0 years ago by • 0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.9 years ago mcahn • 0
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3.1k
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
7.0 years ago topijush ▴ 10
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.1 years ago charleneee95 • 0
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4.2k
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 2.6 years ago by 21k • written 7.8 years ago by • 0
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1.2k
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.2 years ago Shicheng Guo • 0
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1.1k
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problem with identifySigDMR command
methyAnalysis
8.4 years ago yuping.zhang • 0
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1.8k
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methyAnalysis error with example data
methyanalysis
8.6 years ago Tom ▴ 10
4
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10
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4.9k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.8 years ago by ▴ 740 • written 8.8 years ago by ▴ 50
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13
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2.5k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.2 years ago jdangelo • 0
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4.5k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 9.8 years ago by ▴ 80 • written 9.8 years ago by ▴ 370
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5
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1.6k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 9.8 years ago by ▴ 80 • written 9.8 years ago by ▴ 370
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.8 years ago Allegra Petti ▴ 120
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8
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2.5k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.8 years ago by ▴ 160 • written 10.9 years ago by ★ 13k
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6
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3.3k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.9 years ago by 67k • written 10.9 years ago by ★ 13k
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1.9k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.9 years ago Ed Schwalbe ▴ 20
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1.4k
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 11.9 years ago by ▴ 440 • written 11.9 years ago by ▴ 20
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2
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1.9k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 12.0 years ago by ▴ 440 • written 12.0 years ago by ★ 13k
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1.2k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 12.0 years ago by 21k • written 12.0 years ago by ▴ 10
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1.3k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
12.0 years ago Pan Du ▴ 440
21 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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