Showing : methyAnalysis • reset
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
5.2 years ago coobzie • 0
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 7.2 years ago by ★ 1.3k • written 7.2 years ago by • 0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
8.0 years ago mcahn • 0
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3.7k
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
8.1 years ago topijush ▴ 10
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
8.2 years ago charleneee95 • 0
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 3.7 years ago by 21k • written 8.9 years ago by • 0
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
9.3 years ago Shicheng Guo • 0
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1.3k
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problem with identifySigDMR command
methyAnalysis
9.5 years ago yuping.zhang • 0
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methyAnalysis error with example data
methyanalysis
9.7 years ago Tom ▴ 10
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10
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5.8k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 10.0 years ago by ▴ 760 • written 10.0 years ago by ▴ 60
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3.2k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
10.3 years ago jdangelo • 0
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5.3k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 10.9 years ago by ▴ 80 • written 10.9 years ago by ▴ 370
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2.0k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 10.9 years ago by ▴ 80 • written 10.9 years ago by ▴ 370
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
11.9 years ago Allegra Petti ▴ 120
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3.1k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 12.0 years ago by ▴ 160 • written 12.0 years ago by ★ 13k
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6
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3.8k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
13.0 years ago Ed Schwalbe ▴ 20
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1.7k
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 13.0 years ago by ▴ 440 • written 13.0 years ago by ▴ 20
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2.2k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 13.1 years ago by ▴ 440 • written 13.1 years ago by ★ 13k
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1.4k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 13.1 years ago by 21k • written 13.1 years ago by ▴ 10
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1.5k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
13.1 years ago Pan Du ▴ 440
21 results • Page 1 of 1
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Comment: Chip Seq Analysis of RNA Polymerase 2 by Tikaaaq2c • 0
Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by Tikaaaq2c • 0
Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
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