Showing : methyAnalysis • reset
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
5.2 years ago coobzie • 0
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 7.1 years ago by ★ 1.3k • written 7.1 years ago by • 0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
7.9 years ago mcahn • 0
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4
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3.6k
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
8.0 years ago topijush ▴ 10
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
8.1 years ago charleneee95 • 0
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4.9k
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 3.7 years ago by 21k • written 8.8 years ago by • 0
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
9.3 years ago Shicheng Guo • 0
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1.3k
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problem with identifySigDMR command
methyAnalysis
9.5 years ago • updated 9.4 years ago yuping.zhang • 0
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2.0k
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methyAnalysis error with example data
methyanalysis
9.6 years ago Tom ▴ 10
4
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5.7k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 9.9 years ago by ▴ 760 • written 9.9 years ago by ▴ 60
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3.2k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
10.3 years ago jdangelo • 0
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5.2k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 10.9 years ago by ▴ 80 • written 10.9 years ago by ▴ 370
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5
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2.0k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 10.9 years ago by ▴ 80 • written 10.9 years ago by ▴ 370
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
11.9 years ago Allegra Petti ▴ 120
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3.0k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 11.9 years ago by ▴ 160 • written 11.9 years ago by ★ 13k
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6
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3.7k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.9 years ago Ed Schwalbe ▴ 20
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 12.9 years ago by ▴ 440 • written 12.9 years ago by ▴ 20
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 13.0 years ago by ▴ 440 • written 13.0 years ago by ★ 13k
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1.4k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 13.0 years ago by 21k • written 13.0 years ago by ▴ 10
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
13.0 years ago Pan Du ▴ 440
21 results • Page 1 of 1
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Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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Commentator to James W. MacDonald 68k
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