Showing : methyAnalysis • reset
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.3 years ago coobzie • 0
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
7.1 years ago mcahn • 0
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
7.2 years ago topijush ▴ 10
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.3 years ago charleneee95 • 0
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 2.8 years ago by 21k • written 8.0 years ago by • 0
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.4 years ago Shicheng Guo • 0
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1.1k
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problem with identifySigDMR command
methyAnalysis
8.6 years ago yuping.zhang • 0
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methyAnalysis error with example data
methyanalysis
8.8 years ago Tom ▴ 10
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10
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 9.0 years ago by ▴ 750 • written 9.0 years ago by ▴ 50
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.4 years ago jdangelo • 0
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4.7k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 10.0 years ago by ▴ 80 • written 10.0 years ago by ▴ 370
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 10.0 years ago by ▴ 80 • written 10.0 years ago by ▴ 370
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
11.0 years ago Allegra Petti ▴ 120
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2.6k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 11.0 years ago by ▴ 160 • written 11.0 years ago by ★ 13k
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6
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3.4k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 11.0 years ago by 68k • written 11.0 years ago by ★ 13k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.0 years ago Ed Schwalbe ▴ 20
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 12.0 years ago by ▴ 440 • written 12.0 years ago by ▴ 20
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 12.1 years ago by ▴ 440 • written 12.1 years ago by ★ 13k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 12.1 years ago by 21k • written 12.1 years ago by ▴ 10
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
12.2 years ago Pan Du ▴ 440
21 results • Page 1 of 1
Recent ...
Replies
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Awards • All
Popular Question to svlachavas ▴ 840
Popular Question to Matthew McCormack ▴ 180
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.1k
Popular Question to Marco • 0
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WEHI, Melbourne, Australia, 15 minutes ago
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Germany/Heidelberg/German Cancer Research Center, 1 hour ago
Italy, 2 hours ago
India, 3 hours ago
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