Showing : methyAnalysis • reset
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.0 years ago coobzie • 0
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2
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1.6k
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 5.9 years ago by ★ 1.3k • written 5.9 years ago by • 0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.8 years ago mcahn • 0
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2.9k
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.8 years ago topijush ▴ 10
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.0 years ago charleneee95 • 0
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 2.5 years ago by 21k • written 7.7 years ago by • 0
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.1 years ago Shicheng Guo • 0
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1.1k
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problem with identifySigDMR command
methyAnalysis
8.3 years ago yuping.zhang • 0
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1.8k
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methyAnalysis error with example data
methyanalysis
8.5 years ago Tom ▴ 10
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10
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4.8k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.7 years ago by ▴ 740 • written 8.7 years ago by ▴ 50
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2.5k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.1 years ago jdangelo • 0
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4.5k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 9.7 years ago by ▴ 80 • written 9.7 years ago by ▴ 370
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1.5k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 9.7 years ago by ▴ 80 • written 9.7 years ago by ▴ 370
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.7 years ago Allegra Petti ▴ 120
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2.5k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.7 years ago by ▴ 160 • written 10.7 years ago by ★ 13k
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6
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3.2k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.7 years ago by 67k • written 10.7 years ago by ★ 13k
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1.8k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.7 years ago Ed Schwalbe ▴ 20
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 11.7 years ago by ▴ 440 • written 11.7 years ago by ▴ 20
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1.9k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 11.8 years ago by ▴ 440 • written 11.8 years ago by ★ 13k
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1.2k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 11.8 years ago by 21k • written 11.8 years ago by ▴ 10
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1.3k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.8 years ago Pan Du ▴ 440
21 results • Page 1 of 1
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Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open! by Esperan • 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Votes
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
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