Showing : methyAnalysis • reset
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 23 months ago by 21k • written 7.1 years ago by • 0
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614
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
3.4 years ago coobzie • 0
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2
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1.4k
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by • 0
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721
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.2 years ago mcahn • 0
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4
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2.6k
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.3 years ago topijush ▴ 10
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809
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
6.4 years ago charleneee95 • 0
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991
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
7.5 years ago Shicheng Guo • 0
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1
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917
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problem with identifySigDMR command
methyAnalysis
7.8 years ago • updated 7.7 years ago yuping.zhang • 0
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0
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1.7k
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methyAnalysis error with example data
methyanalysis
7.9 years ago Tom ▴ 10
4
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10
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4.4k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.2 years ago by ▴ 740 • written 8.2 years ago by ▴ 50
1
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13
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2.2k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
8.6 years ago jdangelo • 0
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1
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4.1k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 9.1 years ago by ▴ 80 • written 9.1 years ago by ▴ 370
1
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5
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1.3k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 9.2 years ago by ▴ 80 • written 9.2 years ago by ▴ 370
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1.7k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.2 years ago Allegra Petti ▴ 120
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8
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2.2k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.2 years ago by ▴ 160 • written 10.2 years ago by ★ 13k
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6
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3.0k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.2 years ago by 65k • written 10.2 years ago by ★ 13k
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1.7k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.2 years ago Ed Schwalbe ▴ 20
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2
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1.3k
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 11.2 years ago by ▴ 440 • written 11.2 years ago by ▴ 20
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2
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1.7k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 11.3 years ago by ▴ 440 • written 11.3 years ago by ★ 13k
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1
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1.1k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 11.3 years ago by 21k • written 11.3 years ago by ▴ 10
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0
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1.2k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.3 years ago Pan Du ▴ 440
21 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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