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minfidataepic
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf
minfiDataEPIC
MethylationArrayData
MethylationArray
EPICv2manifest
10 days ago
charlie.wright
• 0
0
votes
0
replies
316
views
How to perform a methylation analyisis from beta values matrix and pd.csv
minfiDataEPIC
7 months ago
yemeijie123
• 0
2
votes
3
replies
1.6k
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 6 weeks ago by
macdonaldfrench7286566
• 0 • written 9 months ago by
e1271094
• 0
0
votes
0
replies
586
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
11 months ago
Felix
• 0
0
votes
1
reply
702
views
Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 15 months ago by
Basti
▴ 780 • written 15 months ago by
Ana
• 0
0
votes
1
reply
841
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 17 months ago by
Basti
▴ 780 • written 17 months ago by
titangerd
• 0
0
votes
6
replies
2.8k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 17 months ago by
Zuguang Gu
▴ 290 • written 18 months ago by
Izabela.ams
• 0
0
votes
1
reply
730
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
phelankj
• 0
0
votes
1
reply
3.7k
views
Warning messages in detecting P-values
minfiDataEPIC
methylationArrayAnalysis
updated 19 months ago by
ATpoint
★ 4.7k • written 19 months ago by
rae.alshammari
▴ 10
0
votes
1
reply
810
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis
minfi
MethylationArrayData
minfiDataEPIC
MethylationArray
updated 22 months ago by
Gordon Smyth
52k • written 22 months ago by
Grace
• 0
0
votes
1
reply
1.4k
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile
noob
Normalization
minfi
minfiDataEPIC
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
mikat
• 0
0
votes
1
reply
1.2k
views
EPIC ARRAY ANALYSIS
minfiDataEPIC
#SexPrediction
minfi
updated 3.4 years ago by
Basti
▴ 780 • written 3.4 years ago by
nucasa
• 0
1
vote
1
reply
2.6k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 4.0 years ago by
suman
• 0 • written 4.0 years ago by
Bethan
• 0
0
votes
2
replies
2.4k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 4.2 years ago by
Gordon Smyth
52k • written 4.2 years ago by
Jeff
▴ 20
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The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
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52k
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Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
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