Bioconductor Minfidataepic

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143

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minfiDataEPIC minfi

updated 1 day ago by James W. MacDonald 68k • written 1 day ago by rania.alanany • 0

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557

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DNA minfiData minfiDataEPIC DNAMethylation minfi

4 weeks ago user_bioinfo • 0

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211

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minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest

6 weeks ago charlie.wright • 0

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339

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minfiDataEPIC

8 months ago yemeijie123 • 0

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1.7k

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minfi minfiDataEPIC

updated 12 weeks ago by macdonaldfrench7286566 • 0 • written 10 months ago by e1271094 • 0

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639

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minfi minfiDataEPIC

12 months ago Felix • 0

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733

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minfiDataEPIC minfi

updated 16 months ago by Basti ▴ 780 • written 16 months ago by Ana • 0

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887

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 18 months ago by Basti ▴ 780 • written 18 months ago by titangerd • 0

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2.9k

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minfiDataEPIC EpicV2

updated 18 months ago by Zuguang Gu ▴ 290 • written 19 months ago by Izabela.ams • 0

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777

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minfiDataEPIC minfi

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by phelankj • 0

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3.8k

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minfiDataEPIC methylationArrayAnalysis

updated 20 months ago by ATpoint ★ 4.8k • written 20 months ago by rae.alshammari ▴ 10

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867

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 24 months ago by Gordon Smyth 52k • written 24 months ago by Grace • 0

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1.5k

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Quantile noob Normalization minfi minfiDataEPIC

updated 2.6 years ago by James W. MacDonald 68k • written 2.6 years ago by mikat • 0

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minfiDataEPIC #SexPrediction minfi

updated 3.5 years ago by Basti ▴ 780 • written 3.5 years ago by nucasa • 0

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2.7k

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minfiData plotsex minfi minfiDataEPIC r

updated 4.1 years ago by suman • 0 • written 4.1 years ago by Bethan • 0

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2.5k

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minfiDataEPIC arrays limma minfi Epigenetics

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by Jeff ▴ 20

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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