Bioconductor Minfidataepic

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minfiDataEPIC minfi

updated 6 months ago by Henry • 0 • written 8 months ago by rania.alanany • 0

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DNA minfiData minfiDataEPIC DNAMethylation minfi

9 months ago user_bioinfo • 0

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minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest

9 months ago charlie.wright • 0

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minfiDataEPIC

17 months ago yemeijie123 • 0

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minfi minfiDataEPIC

updated 4 months ago by UlyssesHenson • 0 • written 19 months ago by e1271094 • 0

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minfi minfiDataEPIC

21 months ago Felix • 0

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minfiDataEPIC minfi

updated 2.0 years ago by Basti ▴ 780 • written 2.0 years ago by Ana • 0

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 2.2 years ago by Basti ▴ 780 • written 2.2 years ago by titangerd • 0

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minfiDataEPIC EpicV2

updated 2.2 years ago by Zuguang Gu ▴ 290 • written 2.3 years ago by Izabela.ams ▴ 10

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minfiDataEPIC minfi

updated 5 months ago by nana • 0 • written 2.3 years ago by phelankj ▴ 10

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minfiDataEPIC methylationArrayAnalysis

updated 2.3 years ago by ATpoint ★ 5.0k • written 2.3 years ago by rae.alshammari ▴ 20

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 2.7 years ago by Gordon Smyth 53k • written 2.7 years ago by Grace • 0

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Quantile noob Normalization minfi minfiDataEPIC

updated 3.3 years ago by James W. MacDonald 68k • written 3.3 years ago by mikat • 0

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minfiDataEPIC #SexPrediction minfi

updated 4.2 years ago by Basti ▴ 780 • written 4.2 years ago by nucasa • 0

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minfiData plotsex minfi minfiDataEPIC r

updated 4.8 years ago by suman • 0 • written 4.8 years ago by Bethan • 0

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minfiDataEPIC arrays limma minfi Epigenetics

updated 5.0 years ago by Gordon Smyth 53k • written 5.0 years ago by Jeff ▴ 20

16 results • Page 1 of 1

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Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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