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IRanges GRanges NA

updated 3.1 years ago by ATpoint ★ 5.0k • written 3.1 years ago by Timucin • 0

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pvalue NA R DESeq2

updated 4.0 years ago by ATpoint ★ 5.0k • written 4.0 years ago by Johan Largo • 0

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qCount QuasR NA

updated 5.3 years ago by Michael Stadler ▴ 350 • written 5.3 years ago by jabbar_campbell • 0

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limma mass spec na

updated 6.7 years ago by Gordon Smyth 53k • written 6.7 years ago by reubenmcgregor88 • 0

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methylkit normalizecoverage NA

updated 7.1 years ago by altuna akalin ▴ 20 • written 7.1 years ago by GFM ▴ 20

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deseq2 coldata NA

updated 15 months ago by Michael Love 43k • written 7.3 years ago by t.kuilman ▴ 170

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edger dgelist NA egsea

updated 7.7 years ago by Gordon Smyth 53k • written 7.7 years ago by belmore • 0

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rtracklayer NA

9.2 years ago Dario Strbenac ★ 1.6k

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reportingtools deseq2 NA pvalue

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by NMostajo ▴ 10

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deseq2 NA cooksCutoff

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by colaneri ▴ 30

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gwastools lrr baf NA

updated 10.0 years ago by Stephanie M. Gogarten ▴ 890 • written 10.0 years ago by Vinicius Henrique da Silva ▴ 40

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rtracklayer NA BED getseq

10.0 years ago Dimitris Polychronopoulos ▴ 80

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graphics confidence interval NA

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by Vinicius Henrique da Silva ▴ 40

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Gviz Plot NA graph Job

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by Vinicius Henrique da Silva ▴ 40

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parody r NA

10.7 years ago upendrakumar.devisetty • 0

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snpStats BioConductor LD Linkage Disequilibrium NA

10.8 years ago remi.tournebize ▴ 10

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deseq2 cook NA

updated 11.1 years ago by Michael Love 43k • written 11.1 years ago by skiaphrene ▴ 10

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EdgeR rnaseq NA

updated 11.2 years ago by Aaron Lun ★ 29k • written 11.2 years ago by elliott77 • 0

18 results • Page 1 of 1

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Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k

There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …

Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60

Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!

Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40

Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…

Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0

I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/

Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by Kevin Blighe ★ 4.0k

My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…

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Answer: Identifying differentially expressed genes in individual samples from a large co

Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction

Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Comment: Error installing Seqinfo

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