Bioconductor Na

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IRanges GRanges NA

updated 2.3 years ago by ATpoint ★ 4.6k • written 2.3 years ago by Timucin • 0

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pvalue NA R DESeq2

updated 3.1 years ago by ATpoint ★ 4.6k • written 3.1 years ago by Johan Largo • 0

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qCount QuasR NA

updated 4.5 years ago by Michael Stadler ▴ 350 • written 4.5 years ago by jabbar_campbell • 0

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limma mass spec na

updated 5.9 years ago by Gordon Smyth 52k • written 5.9 years ago by reubenmcgregor88 • 0

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methylkit normalizecoverage NA

updated 6.2 years ago by altuna akalin ▴ 20 • written 6.2 years ago by GFM ▴ 20

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deseq2 coldata NA

updated 5 months ago by Michael Love 43k • written 6.4 years ago by t.kuilman ▴ 170

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edger dgelist NA egsea

updated 6.9 years ago by Gordon Smyth 52k • written 6.9 years ago by belmore • 0

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rtracklayer NA

8.3 years ago Dario Strbenac ★ 1.5k

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reportingtools deseq2 NA pvalue

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by NMostajo ▴ 10

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deseq2 NA cooksCutoff

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by colaneri ▴ 30

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gwastools lrr baf NA

updated 9.1 years ago by Stephanie M. Gogarten ▴ 890 • written 9.1 years ago by Vinicius Henrique da Silva ▴ 40

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rtracklayer NA BED getseq

9.2 years ago Dimitris Polychronopoulos ▴ 80

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graphics confidence interval NA

updated 9.3 years ago by James W. MacDonald 67k • written 9.3 years ago by Vinicius Henrique da Silva ▴ 40

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Gviz Plot NA graph Job

updated 9.5 years ago by James W. MacDonald 67k • written 9.5 years ago by Vinicius Henrique da Silva ▴ 40

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parody r NA

9.8 years ago upendrakumar.devisetty • 0

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snpStats BioConductor LD Linkage Disequilibrium NA

9.9 years ago remi.tournebize ▴ 10

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deseq2 cook NA

updated 10.2 years ago by Michael Love 43k • written 10.2 years ago by skiaphrene ▴ 10

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EdgeR rnaseq NA

updated 10.3 years ago by Aaron Lun ★ 28k • written 10.3 years ago by elliott77 • 0

18 results • Page 1 of 1

Recent ...

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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