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IRanges GRanges NA

updated 2.5 years ago by ATpoint ★ 4.8k • written 2.5 years ago by Timucin • 0

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pvalue NA R DESeq2

updated 3.3 years ago by ATpoint ★ 4.8k • written 3.3 years ago by Johan Largo • 0

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qCount QuasR NA

updated 4.7 years ago by Michael Stadler ▴ 350 • written 4.7 years ago by jabbar_campbell • 0

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limma mass spec na

updated 6.1 years ago by Gordon Smyth 52k • written 6.1 years ago by reubenmcgregor88 • 0

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methylkit normalizecoverage NA

updated 6.4 years ago by altuna akalin ▴ 20 • written 6.4 years ago by GFM ▴ 20

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deseq2 coldata NA

updated 7 months ago by Michael Love 43k • written 6.7 years ago by t.kuilman ▴ 170

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edger dgelist NA egsea

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by belmore • 0

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rtracklayer NA

8.5 years ago Dario Strbenac ★ 1.6k

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reportingtools deseq2 NA pvalue

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by NMostajo ▴ 10

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deseq2 NA cooksCutoff

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by colaneri ▴ 30

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gwastools lrr baf NA

updated 9.4 years ago by Stephanie M. Gogarten ▴ 890 • written 9.4 years ago by Vinicius Henrique da Silva ▴ 40

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rtracklayer NA BED getseq

9.4 years ago Dimitris Polychronopoulos ▴ 80

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graphics confidence interval NA

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by Vinicius Henrique da Silva ▴ 40

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Gviz Plot NA graph Job

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by Vinicius Henrique da Silva ▴ 40

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parody r NA

10.0 years ago upendrakumar.devisetty • 0

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snpStats BioConductor LD Linkage Disequilibrium NA

10.1 years ago remi.tournebize ▴ 10

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deseq2 cook NA

updated 10.4 years ago by Michael Love 43k • written 10.4 years ago by skiaphrene ▴ 10

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EdgeR rnaseq NA

updated 10.5 years ago by Aaron Lun ★ 28k • written 10.5 years ago by elliott77 • 0

18 results • Page 1 of 1

Recent ...

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Comment: Question about using LRT test for time course experiments with DESeq2 by Rob • 0

Just to pick up on this thread as its really helpful for understanding the LRT test. The LRT test is given any genes that change within the…

Comment: Support of parquet files for on-disk Bioconductor objects by btom66245 • 0

@[doodle jump][1] I encountered the exact same problem on both Mac and Windows. Thank you for your sharing. [1]: https://doodlejump24.…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Votes

what the test method for enrichGO in clusterProfiler?

A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

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