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na
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12
votes
13
replies
7.7k
views
EdgeR Differential Expression analysis with NAs
EdgeR
rnaseq
NA
updated 9.6 years ago by
Aaron Lun
★ 28k • written 9.6 years ago by
elliott77
• 0
0
votes
3
replies
4.6k
views
DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2
NA
cooksCutoff
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
colaneri
▴ 30
2
votes
5
replies
3.7k
views
Dealing with NA values from mass spec data using Limma, NA values.
limma
mass spec
na
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
reubenmcgregor88
• 0
0
votes
6
replies
3.5k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
t.kuilman
▴ 170
3
votes
6
replies
2.3k
views
Possible bug in DEseq2 1.6.1 ?
deseq2
cook
NA
updated 9.5 years ago by
Michael Love
41k • written 9.5 years ago by
skiaphrene
▴ 10
0
votes
1
reply
2.2k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
belmore
• 0
2
votes
2
replies
1.8k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz
Plot
NA
graph
Job
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
2
replies
1.8k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats
BioConductor
LD
Linkage Disequilibrium
NA
9.2 years ago
remi.tournebize
▴ 10
2
votes
1
reply
1.8k
views
Removing metadata rows containing NA values in GRanges
IRanges
GRanges
NA
updated 19 months ago by
ATpoint
★ 4.1k • written 19 months ago by
Timucin
• 0
2
votes
1
reply
1.7k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools
lrr
baf
NA
updated 8.4 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.4 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.6k
views
missing values in data as input for parody package
parody
r
NA
9.1 years ago
upendrakumar.devisetty
• 0
0
votes
1
reply
1.5k
views
Plotting confidence intervals with NA values
graphics
confidence interval
NA
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.5 years ago
Dimitris Polychronopoulos
▴ 80
0
votes
1
reply
1.2k
views
values (NA) in p value Deseq2 (reopen)
pvalue
NA
R
DESeq2
updated 2.4 years ago by
ATpoint
★ 4.1k • written 2.4 years ago by
Johan Largo
• 0
2
votes
4
replies
1.2k
views
ResrtingTools include pvalue NA
reportingtools
deseq2
NA
pvalue
updated 7.8 years ago by
Michael Love
41k • written 7.8 years ago by
NMostajo
▴ 10
0
votes
2
replies
1.2k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 5.5 years ago by
altuna akalin
▴ 20 • written 5.5 years ago by
GFM
▴ 20
0
votes
0
replies
777
views
Inconsistent Missing Values When Importing GFF3
rtracklayer
NA
7.6 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
770
views
using qCount from the QuasR package
qCount
QuasR
NA
updated 3.8 years ago by
Michael Stadler
▴ 350 • written 3.8 years ago by
jabbar_campbell
• 0
18 results • Page
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Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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