Showing : onechannelgui • reset
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News: Initial List of Deprecated Packages for Bioc3.6
deprecate EWCE MAIT stepwiseCM onechannelgui News
6.9 years ago shepherl 3.9k
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3
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problem with oneChannelGUI
onechannelgui exon array analysis R
8.7 years ago anna.dolnik • 0
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3
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11k
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How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.9 years ago by ▴ 830 • written 8.9 years ago by ▴ 10
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News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
9.5 years ago raffaele calogero ▴ 500
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oneChannelGUI - setting APT tools folder
software error microarray onechannelgui
9.6 years ago nextgenseq.bioinfo • 0
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Introductory workshop for RNA-seq 27-28 March 2013, Torino, Italy
Network oneChannelGUI Network oneChannelGUI
11.4 years ago raffaele calogero ▴ 500
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problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.2 years ago Manuela Di Russo ▴ 70
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Basic question about GENE 1.0 ST
biomaRt oneChannelGUI biomaRt oneChannelGUI
updated 12.5 years ago by ▴ 60 • written 12.5 years ago by ▴ 200
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1.5k
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conditions to apply BH correction
oneChannelGUI oneChannelGUI
updated 13.1 years ago by ▴ 70 • written 13.1 years ago by ▴ 10
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reply
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Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 13.2 years ago by ▴ 200 • written 13.2 years ago by ▴ 500
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1.0k
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Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 200
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1.1k
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Problems running oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
updated 13.5 years ago by ▴ 910 • written 13.6 years ago by ▴ 200
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1.9k
views
oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 13.6 years ago by ▴ 500 • written 13.6 years ago by ▴ 200
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization probe oneChannelGUI Microarray Normalization probe oneChannelGUI
13.8 years ago rcaloger ▴ 500
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
13.8 years ago ifig319@ifi.csic.es ▴ 10
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Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
13.8 years ago Lin Ying ▴ 10
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1.6k
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oneChannelGUI and Affymetrix 1.0 ST arrays
GO probe oneChannelGUI GO probe oneChannelGUI
updated 14.0 years ago by ▴ 500 • written 14.0 years ago by ▴ 280
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1.0k
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Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 14.0 years ago by 66k • written 14.0 years ago by ★ 2.0k
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Exon array annotation with limma?
Annotation oneChannelGUI Annotation oneChannelGUI
14.5 years ago Michael Imbeault ▴ 220
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2.3k
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Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 14.5 years ago by ▴ 500 • written 14.5 years ago by ▴ 220
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1.2k
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different normalized results using oneChannelGUI, and oligo packages
Normalization limma oligo oneChannelGUI Normalization limma oligo oneChannelGUI
updated 14.6 years ago by ★ 4.3k • written 14.6 years ago by ▴ 500
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1.3k
views
different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 14.6 years ago by ★ 4.3k • written 14.6 years ago by ▴ 840
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989
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export contrast results in OneChannelGUI
limma oneChannelGUI limma oneChannelGUI
updated 14.6 years ago by ▴ 500 • written 14.6 years ago by ▴ 840
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Analysing Human Gene ST 1.0 Arrays with oligo and, oneChannelGUI yield different number of probesets
Preprocessing oneChannelGUI Preprocessing oneChannelGUI
14.6 years ago rcaloger ▴ 500
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5
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2.2k
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Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 14.6 years ago by ★ 4.3k • written 14.6 years ago by ▴ 840
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942
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Question about inspecting splices indexes
Organism probe oneChannelGUI Organism probe oneChannelGUI
15.0 years ago raffaele calogero ▴ 500
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2
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1.1k
views
Question about inspecting splices indexes (oneChannelGUI)
oneChannelGUI oneChannelGUI
15.0 years ago Guido Leoni ▴ 20
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944
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onechannelGUI error
probe oneChannelGUI probe oneChannelGUI
15.1 years ago rcaloger ▴ 500
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858
views
onechannelGUI error,
probe oneChannelGUI probe oneChannelGUI
15.1 years ago PJARES@clinic.ub.es ▴ 30
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1.7k
views
BioStrings questions
probe oneChannelGUI probe oneChannelGUI
15.7 years ago rcaloger ▴ 500
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1.2k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
16.0 years ago Luc Vallieres ▴ 20
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1
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1.2k
views
oneChannelGUI and hugene10stv1cdf
oneChannelGUI oneChannelGUI
updated 16.0 years ago by ▴ 500 • written 16.0 years ago by ▴ 280
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3
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1.1k
views
oneChannelGUI problem
graph oneChannelGUI graph oneChannelGUI
updated 16.3 years ago by ▴ 500 • written 16.3 years ago by ▴ 320
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733
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Errors in importing cel files into oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
16.6 years ago Ester Feldmesser ▴ 60
34 results • Page 1 of 1
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Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…
Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
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