Showing : pdInfoBuilder • reset
0
votes
10
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3.0k
views
PAIR files -- feature set table
Microarray Annotation Organism annotate pdInfoBuilder Microarray Annotation Organism
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ★ 13k
0
votes
8
replies
2.0k
views
pdInfoBuilder: invalid class object ("ScalarCharacter")
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 14.1 years ago by 6.7k • written 14.1 years ago by ★ 3.9k
2
votes
8
replies
1.2k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
2.8 years ago efoss ▴ 10
0
votes
7
replies
1.6k
views
install pdInfoBuilder package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 40
0
votes
7
replies
1.7k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 510
3
votes
7
replies
1.7k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo pdinfobuilder pd.mogene.1.1.st customcdf
updated 7.6 years ago by 65k • written 8.1 years ago by ★ 3.9k
0
votes
6
replies
1.6k
views
PdInfoBuilder for nimblegen array
Annotation Organism oligo pdInfoBuilder Annotation Organism oligo pdInfoBuilder
updated 14.2 years ago by ★ 4.3k • written 14.2 years ago by ▴ 40
0
votes
5
replies
1.7k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation pdinfobuilder
9.1 years ago alakatos ▴ 130
1
vote
5
replies
2.4k
views
Affymetrix Rat Transcriptome Array (Clariom D) annotation
annotation microarray pdinfobuilder oligo
7.7 years ago Ed D • 0
0
votes
4
replies
1.6k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray Annotation GO Organism probe annotate limma convert pdInfoBuilder sva GO sva
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ▴ 140
0
votes
4
replies
1.6k
views
Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 11.5 years ago by ▴ 50 • written 11.5 years ago by ★ 13k
6
votes
4
replies
2.6k
views
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray mirna oligo package pdinfobuilder pd.mirna
updated 4.5 years ago by ▴ 10 • written 6.9 years ago by ▴ 20
0
votes
4
replies
6.4k
views
Problem "Error: is.character(filenames) is not TRUE" in read.xysfiles (Oligo package)
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 10.1 years ago by 65k • written 10.1 years ago by ▴ 60
0
votes
3
replies
1.4k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 16.7 years ago by ★ 7.4k • written 16.8 years ago by ▴ 10
1
vote
3
replies
3.0k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
7.2 years ago yusuf.khan ▴ 10
0
votes
3
replies
1.3k
views
inquiry for CDF file
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
15.6 years ago Rob Dunne ▴ 230
0
votes
3
replies
1.2k
views
pdInfoBuider: how to view SQL scheme?
pdInfoBuilder pdInfoBuilder
updated 14.1 years ago by ★ 4.3k • written 14.1 years ago by ★ 3.9k
0
votes
3
replies
2.7k
views
Draft support for HTA 2.0 with oligo
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 7.8 years ago by ▴ 10 • written 10.2 years ago by ▴ 10
0
votes
3
replies
1.6k
views
Problem with RMA using pdInfoBuilder, oligo and limma
cdf probe affy limma pdInfoBuilder cdf probe affy limma pdInfoBuilder
15.3 years ago Anne-Marie Madore ▴ 30
0
votes
3
replies
1.2k
views
Error using pdInfoBuilder for NimbleGen Array
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 13.3 years ago by 6.7k • written 13.3 years ago by ▴ 20
1
vote
3
replies
2.4k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 40
0
votes
3
replies
1.2k
views
pdInfoBuilder - problem installing the annotation package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 10.1 years ago by ★ 4.3k • written 10.1 years ago by ▴ 60
0
votes
3
replies
2.0k
views
oligo and pd.aragene.1.1.st annotation
Annotation limma Category pdInfoBuilder Annotation limma Category pdInfoBuilder
updated 11.8 years ago by ★ 7.2k • written 11.8 years ago by ▴ 20
2
votes
3
replies
1.2k
views
Annotation package generation for HTA-2_0 by pdInfoBuilder fails
microarray pdInfoBuilder oligo
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
0
votes
2
replies
1.0k
views
Continued problems with pdInfoBuilder
pdInfoBuilder pdInfoBuilder
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 70
0
votes
2
replies
1.6k
views
Custom CDF files
Annotation GO cdf affy PROcess oligo pdInfoBuilder Annotation GO cdf affy PROcess
updated 15.5 years ago by ★ 1.1k • written 15.5 years ago by ▴ 20
0
votes
2
replies
1.7k
views
Affymetrix Mouse Promoter array / pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 14.6 years ago by ▴ 50 • written 14.6 years ago by ▴ 330
0
votes
2
replies
1.0k
views
pdInfoBuilder -- MOUSEDIVm520650
Annotation pdInfoBuilder crlmm Annotation pdInfoBuilder crlmm
updated 14.0 years ago by 65k • written 14.0 years ago by ▴ 100
0
votes
2
replies
1.3k
views
Error with annotation package with pdInfoBuilder for NimbleGen arrays
pdinfobuilder oligo
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
votes
2
replies
1.4k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ▴ 630
0
votes
2
replies
1.3k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ★ 13k
0
votes
2
replies
1.2k
views
oligo and pdInfoBuilder
Annotation Yeast oligo pdInfoBuilder Annotation Yeast oligo pdInfoBuilder
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 340
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 10.7 years ago by ★ 4.3k • written 10.7 years ago by ▴ 50
0
votes
1
reply
857
views
request for simple usage of probe level normalisations
cdf gcrma oligo pdInfoBuilder cdf gcrma oligo pdInfoBuilder
updated 16.6 years ago by ★ 6.5k • written 16.6 years ago by ▴ 320
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 14.5 years ago by ▴ 430 • written 14.5 years ago by ▴ 410
0
votes
1
reply
976
views
pdInfoBuilder
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 10.7 years ago by ▴ 50 • written 10.7 years ago by ★ 4.3k
0
votes
1
reply
1.2k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
10.7 years ago Nitesh Turaga ▴ 50
0
votes
1
reply
750
views
problems with pdInfoBuilder
cdf pdInfoBuilder cdf pdInfoBuilder
updated 16.2 years ago by 65k • written 16.2 years ago by ▴ 10
0
votes
1
reply
1.3k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 10.5 years ago by ▴ 190 • written 10.5 years ago by ▴ 100
0
votes
1
reply
2.0k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 10.5 years ago by ★ 4.3k • written 10.5 years ago by ▴ 290
0
votes
1
reply
1.7k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 10.3 years ago by ▴ 910 • written 10.3 years ago by ★ 4.3k
0
votes
1
reply
1.3k
views
pd.mirna.4.1
pdInfoBuilder pdInfoBuilder
updated 10.0 years ago by 65k • written 10.0 years ago by ★ 13k
0
votes
0
replies
1.3k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.1 years ago zeynep özkeserli ▴ 160
0
votes
0
replies
2.1k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
10.1 years ago Elena Serrano ▴ 30
0
votes
0
replies
1.4k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
10.1 years ago Elena Serrano ▴ 30
0
votes
0
replies
1.3k
views
Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
15.7 years ago Ludo Muller ▴ 50
0
votes
0
replies
1.3k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.1 years ago zeynep özkeserli ▴ 160
0
votes
0
replies
1.4k
views
Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
12.9 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
0
votes
0
replies
845
views
Nimblegen microarray MM8_60mer_expr
Microarray Annotation oligo pdInfoBuilder Microarray Annotation oligo pdInfoBuilder
11.5 years ago Benilton Carvalho ★ 4.3k
50 results • Page 1 of 1
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Comment: Can I trust the differential expression analysis when the two groups overlap on by BioinfGuru ▴ 30
I think I am about to run into a similar issue, so I'll be interested to read peoples opinions on this also. One idea, is based on the fact…
Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups by Gordon Smyth 50k
The MDS plot shows that the time points are hugely different and whereas the replicate samples appear very consistent, with very low variat…
Answer: Store output of matchPWM() by mat149 ▴ 70
hitlist<-lapply(irs, FUN = matchPWM, min.score="90%", with.score=TRUE, pwm = pwm) ot <- endoapply(hitlist, function(x) as(x, "IRanges")) …
Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by alex.pico ▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]' by bandconductor • 0
thanks! you have saved me so much time
Votes
Comment: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
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