Bioconductor Rle

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RLE normalization deseq2

updated 21 months ago by ATpoint ★ 4.6k • written 21 months ago by SH ▴ 10

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1.1k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by lklei001 • 0

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deseq2 RLE

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by f_pardow • 0

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variantannotation VRanges R Rle

updated 6.5 years ago by Valerie Obenchain ★ 6.8k • written 6.5 years ago by Jayendra Shinde • 0

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1.1k

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iranges s4vectors rle rlelist

6.5 years ago endrebak85 ▴ 40

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rle deseq2 normalization

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by Aurora ▴ 20

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Rle Big data coverageByTranscript

6.7 years ago hauken_heyken ▴ 80

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1.8k

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delayedarray rlelist rle

updated 7.1 years ago by Peter Hickey ▴ 740 • written 7.1 years ago by davide risso ▴ 980

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1.7k

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DataFrame Rle generic expression table

updated 18 months ago by Hervé Pagès 16k • written 7.6 years ago by Charles Plessy ▴ 180

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1.9k

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Rle granges iranges

8.2 years ago my4 ▴ 10

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1.8k

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granges Rle coverage View mean

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Christian Ruckert ▴ 170

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biostrings coverage rle iranges

8.6 years ago likeeatingpizza ▴ 10

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1.5k

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rle normalization table

updated 9.2 years ago by Steve Lianoglou ★ 13k • written 9.2 years ago by aiko • 0

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2.2k

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RLE GenomicFeatures rnaseq

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by gen ▴ 30

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3.0k

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RLE iranges granges coverage

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by gen ▴ 30

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2.1k

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rle list irange grangeslist

updated 9.7 years ago by Chris Seidel ▴ 80 • written 9.7 years ago by gen ▴ 30

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rle Views

9.8 years ago Sean Davis 21k

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views iranges rle

9.9 years ago Janet Young ▴ 740

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2.5k

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affyPLM RLE NUSE

updated 9.9 years ago by Sean Davis 21k • written 9.9 years ago by beverly893 ▴ 10

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1.3k

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Rle boxplot

9.9 years ago Johannes Rainer ★ 2.1k

20 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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