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sc3
•
reset
0
votes
3
replies
3.1k
views
Installing SC3: gfortran error on Mac M1
SC3
3.3 years ago
krp
• 0
1
vote
4
replies
1.8k
views
number of cell clusters in scRNA-seq
scran
scater
sc3
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
Bogdan
▴ 670
0
votes
7
replies
2.6k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater
limma
scde
scran
sc3
5.5 years ago
Bogdan
▴ 670
4
votes
5
replies
2.1k
views
Using SC3 with batch corrected MNN values
SC3
Scater
Scran
scRNA-Seq
Batch Correction
updated 5.7 years ago by
Vladimir Kiselev
▴ 150 • written 5.7 years ago by
hamza_karakurt
▴ 60
0
votes
2
replies
1.2k
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 5.9 years ago by
Vladimir Kiselev
▴ 150 • written 5.9 years ago by
weiqiao1029
• 0
0
votes
1
reply
1.5k
views
SC3 how to customize plots ?
SC3
plot
consensus
marker
heatmap
updated 6.0 years ago by
Vladimir Kiselev
▴ 150 • written 6.1 years ago by
shaktirielland
• 0
0
votes
2
replies
1.1k
views
Failure to cluster SC3
SC3
updated 6.2 years ago by
Vladimir Kiselev
▴ 150 • written 6.2 years ago by
jhopkins
• 0
1
vote
1
reply
1.5k
views
A question about log_transformed
SC3
updated 6.5 years ago by
James W. MacDonald
67k • written 6.5 years ago by
liushang
• 0
0
votes
2
replies
1.1k
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 6.6 years ago by
Vladimir Kiselev
▴ 150 • written 6.6 years ago by
qq1493438060
• 0
1
vote
1
reply
1.1k
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 6.9 years ago by
Vladimir Kiselev
▴ 150 • written 6.9 years ago by
yingzi.zhang
▴ 10
0
votes
1
reply
1.4k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 7.0 years ago by
Vladimir Kiselev
▴ 150 • written 7.0 years ago by
angela.ubn
• 0
1
vote
1
reply
1.8k
views
Batch effect removal before SC3?
SC3
batch effect
removebatcheffect
updated 7.1 years ago by
Vladimir Kiselev
▴ 150 • written 7.1 years ago by
muad.abdelhay
▴ 10
1
vote
8
replies
2.7k
views
SC3_estimate_k formatting error?
sc3
scater
updated 7.1 years ago by
Vladimir Kiselev
▴ 150 • written 7.1 years ago by
alexandriapinto1
▴ 10
5
votes
2
replies
6.7k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment
sc3
scater
updated 7.1 years ago by
Vladimir Kiselev
▴ 150 • written 7.1 years ago by
chengyuzou
▴ 10
4
votes
5
replies
2.2k
views
SC3 gene clusters
SC3
single cell
single-cell
Tutorial
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
ahmed.elewa
▴ 20
1
vote
1
reply
1.6k
views
Does SC3 correct counts for gene length?
sc3
scater
single-cell
rna-seq
biclustering
updated 7.3 years ago by
Vladimir Kiselev
▴ 150 • written 7.4 years ago by
firestar
▴ 20
0
votes
1
reply
3.7k
views
Import .mtx file in R
sc3
updated 7.5 years ago by
Vladimir Kiselev
▴ 150 • written 7.6 years ago by
suman70532
• 0
4
votes
2
replies
1.6k
views
sc3_plot_expression, colour labels
sc3
single-cell
updated 7.6 years ago by
Vladimir Kiselev
▴ 150 • written 7.6 years ago by
cfustero
▴ 20
3
votes
3
replies
1.6k
views
Sharing SC3_interactive results
SC3
single-cell
shiny
updated 7.6 years ago by
Vladimir Kiselev
▴ 150 • written 7.6 years ago by
cfustero
▴ 20
4
votes
3
replies
2.1k
views
using SC3 and scater for bulk-RNAseq
sc3
scater
scRNAseq
updated 7.8 years ago by
Vladimir Kiselev
▴ 150 • written 7.8 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
5
replies
2.1k
views
sc3_prepare function error
sc3
scater
single-cell
single cell
updated 7.9 years ago by
Vladimir Kiselev
▴ 150 • written 7.9 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
2
replies
1.5k
views
SC3 tutorial error
SC3
updated 8.1 years ago by
Vladimir Kiselev
▴ 150 • written 8.1 years ago by
Jenn
▴ 30
3
votes
1
reply
1.5k
views
SC3 with latent variable corrected counts
SC3
single cell
updated 8.2 years ago by
Vladimir Kiselev
▴ 150 • written 8.2 years ago by
Mark
▴ 10
23 results • Page
1 of 1
Recent ...
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
ATpoint
★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format
by
ControlF5
• 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open!
by
Alan Downey
• 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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