Showing : sc3 • reset
0
votes
3
replies
3.0k
views
Installing SC3: gfortran error on Mac M1
SC3
3.2 years ago krp • 0
1
vote
4
replies
1.8k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 5.4 years ago by ★ 28k • written 5.4 years ago by ▴ 670
0
votes
7
replies
2.6k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
5.4 years ago Bogdan ▴ 670
4
votes
5
replies
2.1k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.6 years ago by ▴ 150 • written 5.6 years ago by ▴ 60
0
votes
2
replies
1.1k
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 5.8 years ago by ▴ 150 • written 5.8 years ago by • 0
0
votes
1
reply
1.5k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 5.9 years ago by ▴ 150 • written 6.0 years ago by • 0
0
votes
2
replies
1.1k
views
Failure to cluster SC3
SC3
updated 6.1 years ago by ▴ 150 • written 6.1 years ago by • 0
1
vote
1
reply
1.5k
views
A question about log_transformed
SC3
updated 6.4 years ago by 67k • written 6.4 years ago by • 0
0
votes
2
replies
1.1k
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by • 0
1
vote
1
reply
1.0k
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 6.8 years ago by ▴ 150 • written 6.8 years ago by ▴ 10
0
votes
1
reply
1.4k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 6.9 years ago by ▴ 150 • written 6.9 years ago by • 0
1
vote
1
reply
1.7k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 10
1
vote
8
replies
2.7k
views
SC3_estimate_k formatting error?
sc3 scater
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 10
5
votes
2
replies
6.6k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 10
4
votes
5
replies
2.1k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 20
1
vote
1
reply
1.6k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 7.2 years ago by ▴ 150 • written 7.3 years ago by ▴ 20
0
votes
1
reply
3.6k
views
Import .mtx file in R
sc3
updated 7.4 years ago by ▴ 150 • written 7.4 years ago by • 0
4
votes
2
replies
1.6k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ▴ 20
3
votes
3
replies
1.5k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ▴ 20
4
votes
3
replies
2.1k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 7.7 years ago by ▴ 150 • written 7.7 years ago by ★ 1.5k
2
votes
5
replies
2.1k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 7.8 years ago by ▴ 150 • written 7.8 years ago by ★ 1.5k
3
votes
2
replies
1.5k
views
SC3 tutorial error
SC3
updated 8.0 years ago by ▴ 150 • written 8.0 years ago by ▴ 30
3
votes
1
reply
1.5k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 8.1 years ago by ▴ 150 • written 8.1 years ago by ▴ 10
23 results • Page 1 of 1
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Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Votes
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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