Showing : sc3 • reset
1
vote
8
replies
2.3k
views
SC3_estimate_k formatting error?
sc3 scater
updated 6.4 years ago by ▴ 150 • written 6.5 years ago by ▴ 10
0
votes
7
replies
2.2k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
4.9 years ago Bogdan ▴ 670
4
votes
5
replies
1.8k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 20
4
votes
5
replies
1.7k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.1 years ago by ▴ 150 • written 5.1 years ago by ▴ 50
2
votes
5
replies
1.9k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by ★ 1.5k
1
vote
4
replies
1.5k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 4.8 years ago by ★ 28k • written 4.8 years ago by ▴ 670
4
votes
3
replies
1.8k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 7.1 years ago by ▴ 150 • written 7.1 years ago by ★ 1.5k
3
votes
3
replies
1.3k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 20
0
votes
3
replies
2.6k
views
Installing SC3: gfortran error on Mac M1
SC3
2.6 years ago krp • 0
3
votes
2
replies
1.3k
views
SC3 tutorial error
SC3
updated 7.4 years ago by ▴ 150 • written 7.5 years ago by ▴ 30
0
votes
2
replies
927
views
Failure to cluster SC3
SC3
updated 5.6 years ago by ▴ 150 • written 5.6 years ago by • 0
0
votes
2
replies
951
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 5.2 years ago by ▴ 150 • written 5.2 years ago by • 0
5
votes
2
replies
5.9k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by ▴ 10
4
votes
2
replies
1.4k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 6.9 years ago by ▴ 150 • written 6.9 years ago by ▴ 20
0
votes
2
replies
901
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 5.9 years ago by ▴ 150 • written 5.9 years ago by • 0
1
vote
1
reply
1.5k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by ▴ 10
0
votes
1
reply
3.4k
views
Import .mtx file in R
sc3
updated 6.9 years ago by ▴ 150 • written 6.9 years ago by • 0
1
vote
1
reply
1.5k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 6.6 years ago by ▴ 150 • written 6.7 years ago by ▴ 20
3
votes
1
reply
1.4k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ▴ 10
0
votes
1
reply
1.2k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 6.3 years ago by ▴ 150 • written 6.4 years ago by • 0
1
vote
1
reply
883
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 6.2 years ago by ▴ 150 • written 6.2 years ago by ▴ 10
1
vote
1
reply
1.2k
views
A question about log_transformed
SC3
updated 5.8 years ago by 65k • written 5.8 years ago by • 0
0
votes
1
reply
1.3k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 5.4 years ago by ▴ 150 • written 5.4 years ago by • 0
23 results • Page 1 of 1
Recent ...
Replies
Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards • All
Popular Question to Leo Lahti ▴ 40
Scholar to James W. MacDonald 65k
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Scholar to Michael Love 41k
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