Showing : summarizedexperiment • reset
1
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2
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1.8k
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Extending SummarizedExperiment without rowRanges argument
summarizedexperiment rangedsummarizedexperiment
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
2
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2
replies
2.0k
views
SetMethod to dispatch on class in unattached package
s4 methods SummarizedExperiment
updated 7.1 years ago by ★ 29k • written 7.1 years ago by ▴ 20
0
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2
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1.7k
views
SummarizedExperiment no function found corresponding to methods exports from XVector for concatenateObjects
SummarizedExperiment
updated 6.2 years ago by 25k • written 6.3 years ago by ▴ 10
0
votes
2
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1.3k
views
Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 2.9 years ago by • 0 • written 2.9 years ago by • 0
1
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2
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1.6k
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conditional command within GRanges
SummarizedExperiment
updated 3.5 years ago by 700 • written 3.5 years ago by • 0
0
votes
2
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1.2k
views
Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment vignette
4.0 years ago BioInfoBeginnerrr • 0
1
vote
2
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445
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How to install packages such as TCGAbiolinks, SumarizedExperiment?
TCGAbiolinks SummarizedExperiment
written 8 weeks ago by • 0
0
votes
1
reply
2.8k
views
Error in GenomicAlignments::summarizeOverlaps: attempt to select less than one element in OneIndex
SummarizedExperiment GenomicAlignments
4.9 years ago Matthias Munz ▴ 20
2
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1
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4.8k
views
DESeq2 error when creating the DESeqDataSet
deseq2 bioconductor deseqdataset r summarizedexperiment
9.3 years ago sebastian.lobentanzer ▴ 60
1
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1
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1.4k
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subsets different type of data together
R multiassayexperiment rangedsummarizedexperiment summarizedexperiment
updated 7.7 years ago by ★ 1.1k • written 7.7 years ago by ▴ 160
0
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1
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1.7k
views
Getting pheno tables from recount datasets without any NA values in characteristics and geo_accession fields and also without duplicated row.names
recount summarizedexperiment
updated 8.3 years ago by ★ 1.1k • written 8.3 years ago by • 0
0
votes
1
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2.0k
views
Error invalid class "SummarizedExperiment" when using library("MultiDataSet")
summarizedexperiment rangedsummarizedexperiment multidataset
8.5 years ago s.w.vanderlaan ▴ 30
0
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1
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3.7k
views
DESeq2 in R 4.2.2
DESeq2 SummarizedExperiment DelayedArray
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
0
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1
reply
716
views
Rstudio died when put more than three letters in subseting a SummarizedExperiment object
SummarizedExperiment
17 months ago Shuo GG • 0
0
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1
reply
4.0k
views
Convert SummarizedExperiment to SingleCellExperiment Object
SingleCellExperiment SummarizedExperiment SingleR
updated 4.5 years ago by ★ 5.0k • written 4.5 years ago by • 0
0
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1
reply
2.0k
views
Error in SummarizedExperiment(...)
SummarizedExperiment StandR
updated 3.0 years ago by ▴ 70 • written 3.0 years ago by • 0
0
votes
1
reply
1.3k
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
TreeSummarizedExperiment phylogenetic microbiome SummarizedExperiment
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
6
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0
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1.9k
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News: Winners of the 1st Shiny Contest: iSEE
iSEE shiny summarizedExperiment News
6.9 years ago Aaron Lun ★ 29k
0
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0
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1.0k
views
Fastest way to work with a large RangedSummarizedExperiment object
SummarizedExperiment summ
4.4 years ago alexgutteridge ▴ 50
0
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0
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1.7k
views
TCGAanalyze_DMR error when calculating mean methylation difference between two groups.
TCGAbiolinks SummarizedExperiment TCGAanalyze_DMR methylation R
6.9 years ago gerald.mccollam • 0
0
votes
0
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953
views
Merging two SummarizedExperiment dataesets after downloading using TCGAbiolinks
TCGAbiolinks TCGAbiolinksGUI.data SummarizedExperiment
3.7 years ago syednajeebashraf • 0
0
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0
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1.8k
views
DEXseq: error using DEXSeqDataSetFromSE command
rnaseq dexseq summarizedexperiment
8.2 years ago f.carlisle • 0
0
votes
0
replies
714
views
News: RNAseq data analysis with Bioconductor (online course)
DESeq2 SummarizedExperiment
16 months ago info ▴ 10
73 results • Page 2 of 2
Recent ...
Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by James W. MacDonald 68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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