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update
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reset
8
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Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
1
vote
2
replies
6.6k
views
Can't update DESeq2 to most updated version
deseq2
update
9.3 years ago
zshao1
• 0
5
votes
4
replies
5.5k
views
Problem using BiocUpgrade
update
bioclite
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
dianmante
• 0
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
bs14ab
• 0
1
vote
3
replies
2.0k
views
update all/some/none how to set default to "update all"
biocLite
update
all
default
ask
updated 5.2 years ago by
Fischer-philipp
▴ 30 • written 5.2 years ago by
rgiannico
▴ 10
0
votes
2
replies
2.0k
views
Having trouble updating Bioconductor
installation
update
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
debg
• 0
1
vote
3
replies
1.5k
views
How to update the data in an experimental data package
experimentdata
update
updated 9.6 years ago by
Laurent Gatto
1.6k • written 9.6 years ago by
paul.theodor.pyl
▴ 10
0
votes
3
replies
1.3k
views
Cant update old packages
software error
packages
update
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
bs14ab
• 0
0
votes
4
replies
1.3k
views
Difficulties updating a package on Bioconductor
update
Omixer
maintainer
updated 3.4 years ago by
shepherl
3.9k • written 3.4 years ago by
l.j.sinke
• 0
0
votes
1
reply
1.2k
views
PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db
update
annotation
go
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
alfonsosaera
• 0
0
votes
0
replies
879
views
HowTo: install just html help on top of existing packages
bioclite
package installation
update
7.2 years ago
Malcolm Cook
★ 1.6k
3
votes
0
replies
795
views
News:
Support Site Updates
support.bioconductor.org
update
News
5.3 years ago
shepherl
3.9k
0
votes
2
replies
661
views
New release or do I submit as a new package if package update includes a new function
update
new release
version
4.6 years ago
zzrickli
• 0
0
votes
1
reply
498
views
Updated package is not the version specified on the homepage
Versions
Update
BindingSiteFinder
updated 15 months ago by
Mike Smith
★ 6.5k • written 15 months ago by
M.Klostermann
• 0
14 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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