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5
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1.1k
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HiTC importC not working
HiTC IRanges windows debian
updated 5.2 years ago by ▴ 260 • written 5.2 years ago by • 0
0
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2
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1.1k
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rhdf5 installation issue on Windows 64bit
rhdf5 windows
7.6 years ago cyang227 • 0
8
votes
7
replies
1.4k
views
RMySQL availiability with Bioconductor 3.0
Install RMySQL Windows
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 30
0
votes
1
reply
1.0k
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rhdf5 h5ls output differs from Linux to Windows
R h5ls windows linux
updated 5.5 years ago by ★ 6.0k • written 5.7 years ago by • 0
0
votes
3
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696
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pthread problem with tokay2 window platform
pthread windows tokay2
updated 5.5 years ago by ★ 28k • written 5.5 years ago by • 0
2
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4
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2.6k
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Error in windows() function
software error R windows
updated 4.6 years ago by ★ 6.0k • written 4.6 years ago by • 0
0
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5
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1.1k
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rtracklayer::import() BigWig issue on windows (solved)
software error BigWig import windows
3.2 years ago lsilva.m • 0
0
votes
2
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1.3k
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R/Rstudio: using rtracklayer to import bigwig files from http works with MacOS but not with Windows
import.bw rtracklayer Windows http
18 months ago sla • 0
0
votes
3
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2.1k
views
DLL maps not found while compiling package in Windows machine
package compilation error dll windows
7.7 years ago • updated 7.6 years ago Miguel Juliá • 0
1
vote
1
reply
890
views
Building VariantAnnotation on Windows - Makevars.win error
windows variantannotation makevars.win
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 10
1
vote
3
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959
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unable to install DESeq2 there is no package called XML
deseq2 bioconductor windows xml installation
updated 2.8 years ago by 40k • written 2.8 years ago by • 0
0
votes
14
replies
1.7k
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Path to file in windows
bioconductor R windows diffbind
updated 6.1 years ago by ▴ 650 • written 6.1 years ago by • 0
0
votes
1
reply
358
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function plotgenomicregions does not appear in the aspli package installed in windows
software error aspli plotgenomicregions windows
3.1 years ago joanmarquez21 • 0
13 results • Page 1 of 1
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Answer: Normalized counts from LRT or Wald test? by ATpoint ★ 2.8k
They're exactly the same.
Comment: Visualization of negative log CPM values by Gordon Smyth 47k
Sorry, I was wrong to say that log2(TPM) is always negative, but log2(TPM) is not more likely that log2(CPM) to be positive if both are com…
Comment: Visualization of negative log CPM values by Sabiha ▴ 10
@gordonsmyth Apologies, I used a wrong term, I would have mentioned raw `p-value` instead. Unfortunately, only 3 gene passed FDR (BH) in th…
Comment: Extracting fitted expression matrix from Limma by sarah.kelliher • 0
Thank you Prof Smyth for your prompt and informative reply, much appreciated.
Answer: DESeq2 or edgeR for Presence and Absence of Proteins by ATpoint ★ 2.8k
No, both tools expect count data with certain distributional assumptions which are not satisfied by binary data. Since you're a master …
Votes
Comment: Visualization of negative log CPM values
Answer: Extracting fitted expression matrix from Limma
Answer: DESeq2 or edgeR for Presence and Absence of Proteins
Comment: Visualization of negative log CPM values
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
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