Showing : yeast • reset
0
votes
15
replies
2.9k
views
Rsubread crashes in 32bit linux
Yeast Rsubread Yeast Rsubread
updated 11.9 years ago by ★ 3.6k • written 11.9 years ago by ★ 3.3k
0
votes
10
replies
1.5k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 16.5 years ago by ▴ 30 • written 16.5 years ago by ★ 1.1k
0
votes
9
replies
1.9k
views
variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
VariantAnnotation Cancer Yeast annotate Biostrings VariantAnnotation VariantAnnotation
updated 10.2 years ago by 16k • written 10.2 years ago by ▴ 740
0
votes
9
replies
1.2k
views
Help with 'annotation' in GOHyeprGParamsClass
Annotation GO Yeast Category Annotation GO Yeast Category
updated 15.5 years ago by ★ 5.5k • written 15.5 years ago by ▴ 50
0
votes
8
replies
2.0k
views
Rsubread alingner
Alignment Yeast Rsubread Alignment Yeast Rsubread
13.0 years ago Wei Shi ★ 3.6k
0
votes
6
replies
1.4k
views
Questions about edgeR
Yeast edgeR Yeast edgeR
updated 12.4 years ago by ▴ 880 • written 12.4 years ago by ▴ 290
0
votes
6
replies
1.6k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 410
0
votes
6
replies
1.3k
views
Sc03b_MR_v04 CDF package
Genetics Yeast cdf Genetics Yeast cdf
updated 15.7 years ago by 65k • written 15.7 years ago by ▴ 50
0
votes
5
replies
1.7k
views
problem with makeGOGraph function
Yeast graph GOstats Yeast graph GOstats
updated 10.1 years ago by 65k • written 10.1 years ago by ★ 13k
0
votes
5
replies
1.5k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ★ 1.1k
0
votes
5
replies
1.3k
views
affy Yeast 2.0 annotation
Annotation Yeast affy limma AnnBuilder Annotation Yeast affy limma AnnBuilder
updated 19.3 years ago by 6.7k • written 19.3 years ago by ▴ 320
3
votes
4
replies
1.6k
views
ORF lengths using Yeast Annotation package
yeast genomicranges
9.5 years ago dktarathym • 0
0
votes
4
replies
1.1k
views
applicability of tilingArray package
Normalization Yeast affy tilingArray Normalization Yeast affy tilingArray
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 50
0
votes
4
replies
1.2k
views
Gostats with Yeast annotation
Annotation GO Yeast GOstats Annotation GO Yeast GOstats
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 650
0
votes
3
replies
1.3k
views
Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
14.0 years ago Noah Dowell ▴ 410
0
votes
3
replies
1.1k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 320
3
votes
3
replies
2.0k
views
Goseq and yeast
goseq yeast
9.2 years ago Marek Gierlinski ▴ 30
0
votes
3
replies
1.4k
views
Gostats with Yeast annotation
Microarray Annotation GO Cancer Yeast GOstats Microarray Annotation GO Cancer Yeast
15.2 years ago Yolande Tra ▴ 160
0
votes
3
replies
825
views
Yeast and LocuslinkIDs
GO Yeast GO Yeast
updated 19.3 years ago by 21k • written 19.3 years ago by ▴ 60
0
votes
3
replies
1.1k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 19.9 years ago by ★ 1.1k • written 20.0 years ago by ▴ 50
0
votes
3
replies
1.2k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 16.9 years ago by ▴ 200 • written 16.9 years ago by ▴ 10
0
votes
3
replies
1.1k
views
Gostats and custom list
Annotation Yeast convert GOstats AnnotationDbi Annotation Yeast convert GOstats
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 50
0
votes
3
replies
1.7k
views
retrieving external Gene IDs from TranscriptDB Object
Yeast TranscriptDb Yeast TranscriptDb
updated 11.0 years ago by ▴ 340 • written 11.0 years ago by ▴ 360
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
2
replies
2.5k
views
org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
GO Yeast GO Yeast
14.1 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
994
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 18.5 years ago by ★ 2.2k • written 18.5 years ago by ▴ 170
0
votes
2
replies
1.7k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ▴ 20
0
votes
2
replies
1.5k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation Yeast probe annaffy AnnBuilder Annotation Yeast probe annaffy AnnBuilder
updated 19.2 years ago by ▴ 220 • written 19.2 years ago by ▴ 320
0
votes
2
replies
1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
1
vote
2
replies
1.8k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 10
0
votes
2
replies
1.2k
views
oligo and pdInfoBuilder
Annotation Yeast oligo pdInfoBuilder Annotation Yeast oligo pdInfoBuilder
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 340
0
votes
2
replies
2.0k
views
GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 7.1 years ago by • 0 • written 11.9 years ago by ★ 13k
0
votes
2
replies
1.2k
views
biological reps and dye-swaps and duplicate spots in a common reference design
Yeast limma a4 Yeast limma a4
updated 15.5 years ago by ★ 2.0k • written 15.5 years ago by ▴ 10
0
votes
2
replies
921
views
affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
21.8 years ago Laurent Gautier ★ 2.3k
0
votes
2
replies
1.1k
views
YEAST package
Pathways Yeast Pathways Yeast
14.6 years ago suman Duvvuru ▴ 20
0
votes
2
replies
1.8k
views
getSequence from biomaRt changes the order of sequences given as input - is it normal?
Yeast biomaRt Yeast biomaRt
updated 11.3 years ago by ▴ 540 • written 11.3 years ago by ▴ 270
0
votes
2
replies
813
views
affy package and segmentation error
Yeast Yeast
updated 19.5 years ago by ▴ 950 • written 19.5 years ago by ▴ 40
0
votes
2
replies
1.0k
views
Procedure
Yeast PROcess Yeast PROcess
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 240
0
votes
2
replies
884
views
Run GOHyperG on yeast without specifying a chip
Microarray Yeast PROcess Microarray Yeast PROcess
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 100
0
votes
2
replies
1.6k
views
Flanking TSS region for reverse strand using biomaRt
Yeast Organism biomaRt Yeast Organism biomaRt
updated 13.4 years ago by ▴ 10 • written 13.4 years ago by ▴ 340
0
votes
2
replies
1.1k
views
Probe pairs location on chips // ANOVA
Yeast ygs98 probe affy Yeast ygs98 probe affy
updated 22.0 years ago by ▴ 280 • written 22.0 years ago by ▴ 50
0
votes
2
replies
895
views
Regarding ScISI
Yeast ScISI Yeast ScISI
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 270
0
votes
2
replies
863
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 20.4 years ago by ★ 5.5k • written 20.4 years ago by ▴ 80
0
votes
2
replies
1.4k
views
New gage package: Generally Applicable Gene-set/Pathway Analysis
Sequencing Microarray Pathways GO Yeast gage Sequencing Microarray Pathways GO Yeast
13.5 years ago Luo Weijun ★ 1.6k
0
votes
2
replies
1.1k
views
trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 19.2 years ago by ▴ 10 • written 19.2 years ago by ▴ 320
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.5 years ago by ▴ 70 • written 20.5 years ago by ▴ 80
0
votes
1
reply
1.0k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation GO Yeast mgug4122a goCluster Annotation GO Yeast mgug4122a goCluster
updated 18.3 years ago by ▴ 60 • written 18.3 years ago by ▴ 30
0
votes
1
reply
1.0k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 140
0
votes
1
reply
749
views
Question about affy
Yeast affy Yeast affy
updated 21.1 years ago by ★ 2.3k • written 21.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 100
50 results • Page 1 of 1
Recent ...
Replies
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
The city by the bay, 3 minutes ago
India, 29 minutes ago
South Korea, 35 minutes ago
France, 46 minutes ago
INDIA, 1 hour ago
Traffic: 697 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6