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1
vote
3
replies
1.7k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 23 months ago by 66k • written 23 months ago by ▴ 60
0
votes
0
replies
3.0k
views
Create a Gene Enrichment GO plot from goana output
goana RNASeq edgeR RnaSeq GO
2.2 years ago Raito92 ▴ 60
15
votes
18
replies
3.4k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2 edgeR goana GO
updated 2.2 years ago by 50k • written 2.2 years ago by ▴ 60
2
votes
2
replies
1.3k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS PCA RNASeq MDS
updated 2.2 years ago by 50k • written 2.2 years ago by ▴ 60
0
votes
2
replies
800
views
Extend comparisons between two groups to more groups in DESEQ2
edgeR DEGs DESEQ2 RNASeqData
2.3 years ago Raito92 ▴ 60
0
votes
6
replies
3.5k
views
Performing simple pairwise comparisons in DESEQ2
edgeR DEG RNASeq DESEQ2
updated 2.3 years ago by 42k • written 2.3 years ago by ▴ 60
0
votes
1
reply
339
views
RNA Targeted Ampliseq Data analysis - What approach to prefer?
ampliseq rna targeted edger deseq2
updated 3.9 years ago by 42k • written 3.9 years ago by ▴ 60
1
vote
2
replies
1.5k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.1 years ago • updated 4.0 years ago Raito92 ▴ 60
5
votes
7
replies
2.2k
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 4.1 years ago by 50k • written 4.1 years ago by ▴ 60
5
votes
11
replies
2.6k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 4.1 years ago by 50k • written 4.1 years ago by ▴ 60
3
votes
5
replies
1.3k
views
Different numbers of DE genes using edgeR and DESEQ2
edger deseq2 rnaseq de
updated 4.1 years ago by 50k • written 4.1 years ago by ▴ 60
6
votes
6
replies
2.0k
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 4.1 years ago by 50k • written 4.1 years ago by ▴ 60
0
votes
1
reply
2.2k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
4.7 years ago Raito92 ▴ 60
2
votes
6
replies
1.1k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 4.7 years ago by ★ 6.5k • written 4.7 years ago by ▴ 60
2
votes
3
replies
1.5k
views
Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
updated 5.0 years ago by ★ 3.6k • written 5.0 years ago by ▴ 60
2
votes
2
replies
2.1k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 5.0 years ago by 66k • written 5.0 years ago by ▴ 60
5
votes
4
replies
1.7k
views
Function kegga not working for species other than the conventional ones - Pathways do not overlap with universe
kegga limma pathway analysis kegg
updated 5.0 years ago by 50k • written 5.1 years ago by ▴ 60
5
votes
6
replies
1.4k
views
Improving the performance of the align function from Rsubread for old Roche454 reads
align rsubread roche454 rnaseq
updated 5.1 years ago by ★ 3.6k • written 5.1 years ago by ▴ 60
6
votes
2
replies
2.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 5.1 years ago by 50k • written 5.1 years ago by ▴ 60
7
votes
5
replies
3.8k
views
featureCounts returning a matrix of counts full of 0...
featureCounts rnaseq Rsubread
updated 5.1 years ago by 50k • written 5.1 years ago by ▴ 60
12
votes
7
replies
2.0k
views
No method for coercing this S4 class to a vector, as trying to import my own data rather than using SRA in the workflow RnaSeqGeneEdgeRQL
rnaseqgeneedgerql shortread Rsubread
updated 5.1 years ago by ▴ 60 • written 5.1 years ago by ▴ 60
2
votes
2
replies
674
views
Boxplot object (from the RNASeqGeneEdgeRQL workflow) returning a blank file...
boxplot software error
updated 5.1 years ago by 50k • written 5.1 years ago by ▴ 60
22 results • Page 1 of 1
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