User: Ryan C. Thompson

7

votes

28

replies

6.2k

views

rsubread featurecounts

updated 3 months ago by Gordon Smyth 50k • written 9.2 years ago by Ryan C. Thompson ★ 7.9k

9

votes

9

replies

5.4k

views

rtracklayer bed

updated 3.2 years ago by merv ▴ 120 • written 8.1 years ago by Ryan C. Thompson ★ 7.9k

1

vote

5

replies

1.3k

views

biomart

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by Ryan C. Thompson ★ 7.9k

3

votes

2

replies

779

views

limma decidetests

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by Ryan C. Thompson ★ 7.9k

2

votes

3

replies

1.2k

views

rhstlib installation compilation error

6.0 years ago Ryan C. Thompson ★ 7.9k

2

votes

2

replies

1.1k

views

summarizeoverlaps genomicalignments

updated 6.1 years ago by Valerie Obenchain ★ 6.8k • written 6.1 years ago by Ryan C. Thompson ★ 7.9k

0

votes

2

replies

1.2k

views

edgeR edgeR

updated 6.1 years ago by sgupt46 • 0 • written 11.0 years ago by Ryan C. Thompson ★ 7.9k

0

votes

3

replies

1.8k

views

repitools promoter tss annotation

6.2 years ago Ryan C. Thompson ★ 7.9k

1

vote

9

replies

1.8k

views

nondetects software error

updated 6.2 years ago by corocla • 0 • written 6.3 years ago by Ryan C. Thompson ★ 7.9k

9

votes

2

replies

1.7k

views

sva pca

updated 6.6 years ago by Vegard Nygaard ▴ 110 • written 6.6 years ago by Ryan C. Thompson ★ 7.9k

1

vote

2

replies

1.2k

views

rtracklayer bed software error

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by Ryan C. Thompson ★ 7.9k

4

votes

3

replies

4.7k

views

granges metadata

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by Ryan C. Thompson ★ 7.9k

0

votes

0

replies

1.1k

views

combat rnaseq sva

7.2 years ago Ryan C. Thompson ★ 7.9k

1

vote

3

replies

1.1k

views

biomart maketxdbfrombiomart genomicfeatures

7.7 years ago Ryan C. Thompson ★ 7.9k

2

votes

2

replies

1.2k

views

summarizedexperiment backwards compatibility

updated 7.9 years ago by Hervé Pagès 16k • written 7.9 years ago by Ryan C. Thompson ★ 7.9k

2

votes

1

reply

1.3k

views

csaw differential binding analysis bin size

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by Ryan C. Thompson ★ 7.9k

2

votes

3

replies

1.2k

views

csaw normalization

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by Ryan C. Thompson ★ 7.9k

7

votes

2

replies

1.5k

views

edger limma deseq2 p-value distribution

updated 8.2 years ago by Gordon Smyth 50k • written 8.2 years ago by Ryan C. Thompson ★ 7.9k

0

votes

3

replies

1.3k

views

updated 8.4 years ago by Gordon Smyth 50k • written 10.1 years ago by Ryan C. Thompson ★ 7.9k

0

votes

1

reply

1.0k

views

design matrix spline ns limma

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by Ryan C. Thompson ★ 7.9k

4

votes

2

replies

1.7k

views

chipqc chipseq

updated 8.6 years ago by Thomas Carroll ▴ 420 • written 8.6 years ago by Ryan C. Thompson ★ 7.9k

5

votes

3

replies

1.7k

views

edgeR cpm voom limma

8.6 years ago Ryan C. Thompson ★ 7.9k

9

votes

6

replies

1.8k

views

independent filtering edger deseq2

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by Ryan C. Thompson ★ 7.9k

18

votes

12

replies

3.7k

views

edgeR deseq2 rna-seq independent filtering

updated 8.9 years ago by Michael Love 42k • written 8.9 years ago by Ryan C. Thompson ★ 7.9k

8

votes

4

replies

1.7k

views

camera edger pathway analysis

updated 8.9 years ago by Gordon Smyth 50k • written 8.9 years ago by Ryan C. Thompson ★ 7.9k

12

votes

10

replies

6.5k

views

edger dge differential expression

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by Ryan C. Thompson ★ 7.9k

2

votes

1

reply

1.0k

views

rsubread featurecounts saf

9.0 years ago Ryan C. Thompson ★ 7.9k

2

votes

2

replies

1.4k

views

frma frmatools

updated 9.3 years ago by Matthew McCall ▴ 830 • written 9.3 years ago by Ryan C. Thompson ★ 7.9k

2

votes

8

replies

2.5k

views

frma frmatools

updated 9.3 years ago by Matthew McCall ▴ 830 • written 9.3 years ago by Ryan C. Thompson ★ 7.9k

0

votes

6

replies

1.3k

views

bsgenome

9.3 years ago Ryan C. Thompson ★ 7.9k

1

vote

1

reply

1.1k

views

Annotation Rsubread

updated 9.5 years ago by Gordon Smyth 50k • written 10.3 years ago by Ryan C. Thompson ★ 7.9k

0

votes

6

replies

2.2k

views

annotate AnnotationDbi annotate AnnotationDbi

updated 9.6 years ago by Jenny Drnevich ★ 2.0k • written 10.9 years ago by Ryan C. Thompson ★ 7.9k

0

votes

0

replies

829

views

9.8 years ago Ryan C. Thompson ★ 7.9k

0

votes

0

replies

628

views

limma limma

9.8 years ago Ryan C. Thompson ★ 7.9k

0

votes

1

reply

699

views

updated 9.9 years ago by Michael Lawrence ★ 11k • written 9.9 years ago by Ryan C. Thompson ★ 7.9k

0

votes

3

replies

575

views

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by Ryan C. Thompson ★ 7.9k

0

votes

0

replies

1.2k

views

Pathways graphite Pathways graphite

10.0 years ago Ryan C. Thompson ★ 7.9k

0

votes

3

replies

2.4k

views

Annotation BSgenome BSgenome Rsubread Annotation BSgenome BSgenome Rsubread

updated 10.0 years ago by Wei Shi ★ 3.6k • written 10.0 years ago by Ryan C. Thompson ★ 7.9k

0

votes

5

replies

2.6k

views

convert convert

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by Ryan C. Thompson ★ 7.9k

0

votes

0

replies

805

views

DEXSeq DEXSeq

10.1 years ago Ryan C. Thompson ★ 7.9k

0

votes

20

replies

2.4k

views

edgeR edgeR

updated 2.2 years ago by Gordon Smyth 50k • written 10.3 years ago by Ryan C. Thompson ★ 7.9k

0

votes

7

replies

1.0k

views

updated 10.3 years ago by James W. MacDonald 65k • written 10.3 years ago by Ryan C. Thompson ★ 7.9k

0

votes

0

replies

437

views

10.4 years ago Ryan C. Thompson ★ 7.9k

0

votes

6

replies

943

views

Annotation Annotation

updated 10.4 years ago by Hervé Pagès 16k • written 10.4 years ago by Ryan C. Thompson ★ 7.9k

0

votes

5

replies

2.5k

views

Rsubread Rsubread

updated 10.5 years ago by Wei Shi ★ 3.6k • written 10.5 years ago by Ryan C. Thompson ★ 7.9k

0

votes

1

reply

897

views

tweeDEseq tweeDEseq

updated 10.7 years ago by Gonzalez Ruiz, Juan Ramon ▴ 20 • written 10.7 years ago by Ryan C. Thompson ★ 7.9k

0

votes

0

replies

719

views

convert convert

10.8 years ago Ryan C. Thompson ★ 7.9k

0

votes

0

replies

1.5k

views

Normalization GO limma edgeR Normalization GO limma edgeR

10.8 years ago Ryan C. Thompson ★ 7.9k

2

votes

2

replies

970

views

updated 10.9 years ago by Gordon Smyth 50k • written 10.9 years ago by Ryan C. Thompson ★ 7.9k

0

votes

17

replies

2.4k

views

limma limma

updated 11.1 years ago by Simon Anders ★ 3.7k • written 11.1 years ago by Ryan C. Thompson ★ 7.9k