Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
2
replies
1.3k
views
Interaction in Design Experimental
rnaseqGene
6 months ago
Ferdinand David
• 0
0
votes
0
replies
363
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
6 months ago
Gordon Smyth
53k
1
vote
4
replies
2.3k
views
Heatmap of the Count Matrix
rnaseqGene
updated 3 months ago by
ArnulfoByrd
• 0 • written 6 months ago by
Ferdinand David
• 0
0
votes
1
reply
625
views
DESeq2 results
result
DESeq2
subsetting
updated 6 months ago by
ATpoint
★ 5.0k • written 6 months ago by
rajdeepboral00
• 0
0
votes
0
replies
271
views
DiffBind plot.profile error
BiocParallel
DiffBind
6 months ago
this_is_me_trying
• 0
0
votes
4
replies
9.0k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.3 years ago by
Aytaç
• 0
0
votes
4
replies
939
views
Position of the legend object in complexHeatmap
ComplexHeatmap
6 months ago
caroline.zanchi
▴ 10
0
votes
4
replies
3.2k
views
Drawing custom KEGG pathways
pathview
KEGG
written 4.6 years ago by
curiousmind007
▴ 10
1
vote
18
replies
7.5k
views
error in ChAMP loading file
ChAMP
updated 6 months ago by
josephasmith1310
• 0 • written 3.1 years ago by
Giulia
• 0
1
vote
4
replies
2.1k
views
How to left_join a tidySummarizedExperiment with a GRanges object by seqnames and start (tidyverse-style)?
GenomicRanges
tidySummarizedExperiment
tidyomics
8 months ago • updated 3 months ago
Kateřina
• 0
3
votes
2
replies
6.4k
views
limma duplicateCorrelation appropriate where some blocks cross condition and some are in same condition?
limma
7 months ago • updated 6 months ago
Geoff
• 0
0
votes
1
reply
872
views
Workflow to Analyse DNA Sequence specify gene expression in a fungus under stress
rnaseqGene
updated 7 months ago by
Michael Love
43k • written 7 months ago by
Ferdinand David
• 0
0
votes
1
reply
446
views
Unclear DEseq2 replaceOutliers error message
DESeq2
updated 7 months ago by
Michael Love
43k • written 7 months ago by
Pak
• 0
0
votes
1
reply
478
views
lncRNA functional annotation package
RNAseq123
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
tarek.mohamed
• 0
1
vote
1
reply
691
views
Biomart server error
biomaRt
BioMartGOGeneSets
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
tarek.mohamed
• 0
0
votes
0
replies
9
views
Spam:
Best Piles Clinic in Hyderabad
cadd.v1.6.hg38
BestPilesClinicinHyderabad
hcg110.db
MethylSeekR
7 months ago
Laserqure03
0
0
votes
2
replies
1.9k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
GUI
written 21.8 years ago by
Ann Loraine
▴ 30
0
votes
1
reply
611
views
Difference in DESeq2 output and tidybulk DESeq2 method
DifferentialExpression
DESeq2
tidybulk
RNASeq
updated 7 months ago by
Michael Love
43k • written 7 months ago by
s.malik
• 0
3
votes
2
replies
2.1k
views
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
DESeq2
7 months ago
dudutchy
▴ 10
0
votes
8
replies
1.6k
views
ERCC Spike-In controls being discarded during Tximeta process:
@mikelove
tximeta
updated 7 months ago by
Michael Love
43k • written 7 months ago by
Gaurav
• 0
2
votes
4
replies
2.7k
views
Altered (negative or positive) logFC values for same gene from two intitial count matrices, one being a subset of the other
Transcriptomics
edgeR
DEG
7 months ago
Maziya
• 0
4
votes
17
replies
5.9k
views
How to load scRNA-seq data from GEO
SingleCellExperiment
GEO
updated 6 months ago by
ATpoint
★ 5.0k • written 7 months ago by
petergrahamclark
▴ 10
2
votes
3
replies
1.5k
views
Differential gene expression analysis on haplotype-resolved diploid assembly
edgeR
DESeq2
haplotype
limma
7 months ago
Paulito
• 0
0
votes
1
reply
656
views
Using EBI Image on Ranged Bar Chart
EBImage
written 7 months ago by
ekatcher
• 0
1
vote
3
replies
1.3k
views
Possible issue following the logNormCounts(filtered) with resulted fit
single-cell
SingleCell
SingleCellExperiment
SingleCellWorkflow
SingleCellData
7 months ago
Konstantinos Yeles
▴ 90
0
votes
2
replies
917
views
edgeR in DMR mode - replicates give batch effect - how to build design matrix with condition and replicate
edgeR
updated 7 months ago by
Paul Harrison
▴ 110 • written 7 months ago by
Francesco
• 0
0
votes
2
replies
600
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 4 months ago by
Liona
• 0 • written 7 months ago by
Maria Doyle
▴ 110
0
votes
0
replies
310
views
Blank gene_id in featureCounts
featureCounts
Rsubread
7 months ago
Meg
• 0
2
votes
5
replies
1.4k
views
Heatmap of rnaseq data with z-score scale
heatmaps
RNASeq
updated 7 months ago by
Paul Harrison
▴ 110 • written 7 months ago by
giovanna
▴ 10
0
votes
1
reply
568
views
FCS 32 support going backwards?
flowCore
updated 7 months ago by
shosioness123q
• 0 • written 7 months ago by
Oliver
• 0
0
votes
1
reply
500
views
Typo in the help of lmFit()
limma
updated 7 months ago by
Gordon Smyth
53k • written 7 months ago by
Balazs
• 0
0
votes
2
replies
1.1k
views
Memory issue while using "quickcluster" and "computeSumFactors" functions on single cell RNA seq dataset with 7-9 lac cells
scran
updated 7 months ago by
ATpoint
★ 5.0k • written 7 months ago by
amlanjyoti
• 0
4
votes
4
replies
2.1k
views
Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatmap
DESeq2
ComplexHeatmap
7 months ago
caroline.zanchi
▴ 10
0
votes
2
replies
690
views
Limma suqeezeVar
limma
7 months ago
Mengchun
• 0
0
votes
0
replies
363
views
What Input-type do I use in decouplR::run_viper?
decoupleR
viper
updated 7 months ago by
Michael Love
43k • written 7 months ago by
Julian
• 0
0
votes
2
replies
1.3k
views
Limma trend with limpa
limpa
limma
trend
updated 7 months ago by
Gordon Smyth
53k • written 7 months ago by
Alejandro
• 0
0
votes
1
reply
445
views
DESeq2 from phyloseq error
DESeq2
phyloseq
7 months ago
asafpr
• 0
0
votes
0
replies
340
views
Combining COMBAT-seq result (raw count) with other raw count
rnaseq
combat-seq
sva
combat
bulk-rnaseq
7 months ago
dudwnsrla1
• 0
0
votes
1
reply
552
views
Can't install BioC packages (and manager) behind firewall
Install
updated 7 months ago by
Marcel Ramos
700 • written 7 months ago by
delphine
• 0
1
vote
2
replies
1.5k
views
GSVA 1.52.2 (new API) nb of workers?
parallelize
workers
GSVA
written 18 months ago by
johanna.galvis
• 0
0
votes
2
replies
563
views
How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignments?
GenomicAlignments
updated 7 months ago by
Hervé Pagès
16k • written 7 months ago by
Charles
• 0
4
votes
2
replies
1.4k
views
GAlignments Cigar to GRanges
GenomicRanges
cigarRangesAlongReferenceSpace
GenomicAlignments
Cigar
7 months ago
pineiroalejandro
▴ 10
3
votes
3
replies
672
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub
HubPub
ExperimentHub
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
igor
▴ 50
6
votes
8
replies
5.7k
views
WGCNA coupled with differential expression analysis: question about baseline module detection
wgcna
WGCNA
written 5.7 years ago by
Colari19
▴ 60
0
votes
3
replies
5.3k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
updated 7 days ago by
gexose2839
• 0 • written 2.7 years ago by
mauricio.microbiol
• 0
3
votes
1
reply
672
views
DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
DESeq2
apeglm
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
sk
• 0
0
votes
0
replies
1.1k
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq
profileplyr
DiffBind
7 months ago
Muhammad
• 0
0
votes
0
replies
11
views
Spam:
County Group Wave City Ghaziabad
ri16cod.db
ncdfFlow
7 months ago
countywavecityghaziabad
0
1
vote
5
replies
1.5k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2
heatmaps
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
caroline.zanchi
▴ 10
0
votes
1
reply
415
views
Error in readCodelinkSet function
error
codelink
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
nazaninhoseinkhan
• 0
46,701 results • Page
5 of 935
Recent ...
Replies
Comment: Empty boxes in treemap plot rrvgo package
by
TikTsokaasocissalpc
• 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Istvan Albert
▴ 50
Popular Question
to
Dario Strbenac
★ 1.6k
Locations
• All
Barcelona, Spain,
50 minutes ago
United States,
2 hours ago
Finland,
3 hours ago
The city by the bay,
5 hours ago
WEHI, Melbourne, Australia,
7 hours ago
Traffic: 680 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6