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3.9 years ago Hanan ▴ 10
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swish in a blocking design?
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3.9 years ago msll0802 • 0
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3.9 years ago Rebecca • 0
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How to determine if limma can adjust for batch effect
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3.9 years ago nwalton • 0
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makeChrStrandData from ChromHeatMap package not returning every gene
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3.9 years ago cristina.condelopez • 0
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3.9 years ago jaydengitt • 0
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Error in findOverlaps function
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incorporating batch into DESeq2 design after batch correction with combatseq
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3.9 years ago Clay • 0
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3.9 years ago Sam • 0
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Is RnBeads Tool Compatible with Illumina EPIC Methylome Data?
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3.9 years ago Jonathan • 0
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Controlling for sex variance in Galaxy DESeq2
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3.9 years ago Ety • 0
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from kallisto to deseq2 analysis
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3.9 years ago Marianna ▴ 20
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0
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3.9 years ago jackson0696 • 0
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5.2 years ago • updated 3.9 years ago Tongjun • 0
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3.9 years ago msn ▴ 10
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3.9 years ago Charles Plessy ▴ 180
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Bioinformatics exercises for beginner
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4.0 years ago • updated 3.9 years ago shepherl 4.3k
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3.9 years ago Chise ▴ 10
0
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celldex error when downloading reference datasets
celldex SingleR
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thousands of strings of 5 or more consecutive stopcodons
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3.9 years ago arthur.kroon • 0
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Annotating copy number alterations per sample using CNVRanger R package and return of duplicated gene symbols
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3.9 years ago svlachavas ▴ 840
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updated 3.9 years ago by 4.3k • written 3.9 years ago by • 0
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883
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How to design limma for two populations from each tumor, multiple tumors from several of the patients
limma
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updated 4.0 years ago by 43k • written 4.0 years ago by • 0
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another problem when converting bed to granges using togranges
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4.0 years ago Bakhtiyar • 0
46,730 results • Page 99 of 935
Recent ...
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Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0
Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…
Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0
thank you very much. https://www.biostars.org/p/9617271/
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …
Answer: Bile acid analysis with limpa by Gordon Smyth 53k
I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
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