0
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1
reply
482
views
Correlation between gene clusters
genomes RNASeqData
written 11 months ago by • 0
0
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2
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737
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Mean variance curve troubleshoot filtering
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11 months ago gingergeiger22 • 0
0
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1
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625
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Please, I desperately need help with DESeq2. Three groups of repeated measures with two timepoints... (plus an additional group)
edgeR DESeq2
updated 11 months ago by 43k • written 12 months ago by • 0
2
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1
reply
747
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Is it possible to work with DESeq2 where data is not properly matched for sex and age
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updated 11 months ago by 43k • written 12 months ago by • 0
0
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1
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1.7k
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How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 11 months ago by • 0 • written 4.0 years ago by ▴ 60
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5
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1.1k
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How do I fix an odd voom plot in a combined dataset?
limma Normalization voom
updated 11 months ago by 68k • written 11 months ago by • 0
1
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8
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Incorporating Salmon offset matrix into Wilcoxon DEG analysis
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11 months ago Andre • 0
0
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2
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754
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DESeq error: counts matrix should be numeric, currently it has mode: character
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12 months ago Kucsera • 0
0
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1
reply
655
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combining raw counts and estimated counts
RNASeqData GEO TCGAbiolinks
updated 12 months ago by • 0 • written 12 months ago by • 0
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4
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2.3k
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News: EuroBioC2023 abstract submission closing soon!
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written 2.7 years ago by ▴ 110
0
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2
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820
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Cross-validation with multiple control subgroups in limma
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12 months ago Ali Barry ▴ 40
1
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1
reply
567
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Can DESeq2's design compensate for sequencing experimental design shortcomings?
DESeq2
updated 12 months ago by 43k • written 12 months ago by • 0
0
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1
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601
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Job: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal Patterning
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updated 11 months ago by • 0 • written 12 months ago by ★ 2.0k
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1
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680
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ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
ChAMP
updated 12 months ago by • 0 • written 12 months ago by • 0
1
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9
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Normalizing batch effects using technical replicates for DGE analysis between two conditions from 2 different runs
limma DESeq2 edgeR
written 12 months ago by ▴ 40
0
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2
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1.2k
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Error in get_anno_data(ontology) : ontology not supported yet...
EnrichDO
12 months ago GODseeker • 0
4
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2
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1.1k
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Standardization of rlog transformed counts before PCA
RNASeq DESeq2 Visualization
updated 12 months ago by ★ 5.0k • written 12 months ago by ▴ 10
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2
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632
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Build error on kunpeng2 Linux aarch64
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updated 11 months ago by • 0 • written 12 months ago by • 0
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3
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Limma - using both array and spot weights in lmFit
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2
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Margins for gene_set_enrichment_plot
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updated 12 months ago by ★ 1.1k • written 12 months ago by • 0
0
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1
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316
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Errors running learn.bn function from Pigengene in windows environment
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written 12 months ago by • 0
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2
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Need new version : tx2gene.gencode.v47.csv
tximportData
12 months ago • updated 6 months ago Gaurav • 0
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5
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Deseq2 Design
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updated 12 months ago by 68k • written 12 months ago by • 0
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p value is 0, padj is 0
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12 months ago Wirayatida • 0
0
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2
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Cannot install GO.db and org.Hs.eg.db
Install
updated 12 months ago by 68k • written 12 months ago by • 0
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Help using rtracklayer for gene ID extraction
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written 12 months ago by • 0
1
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2
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Pre-filtering TPM kallisto for ssGSEA / DESeq2
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12 months ago georgii.vdovin • 0
0
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1
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898
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Feature Counts -R XS Read Assignment Tag
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updated 12 months ago by 53k • written 22 months ago by • 0
0
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12 months ago 2zrcj3448p 0
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1
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9
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MEDIPS for chIP-Seq
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1
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406
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updated 12 months ago by ▴ 70 • written 12 months ago by • 0
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2
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Advice needed: Using limma for differential pathway analysis with continuous disease progression scores
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12 months ago Tadeoye ▴ 20
0
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7
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1.3k
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DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMean, L2FC, ...
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updated 12 months ago by • 0 • written 12 months ago by • 0
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4
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Can we get beta values with DMRcate package
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12 months ago Melisa Tecik • 0
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2
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771
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12 months ago SamGG ▴ 360
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4
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RSubread output significantly different from bash Subread output
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updated 12 months ago by ★ 5.0k • written 12 months ago by ▴ 10
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0
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512
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12 months ago cailing20 • 0
0
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1
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560
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Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
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updated 12 months ago by 43k • written 12 months ago by ▴ 20
0
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2
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958
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sva: get a sv for RIN scores
limma sva variancePartition voom RNASeq
updated 12 months ago by 53k • written 12 months ago by ▴ 10
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git push errors
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12 months ago Jiping Wang ▴ 90
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3
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How to annotate a limma Elist raw class object with an annotation file
limma AnnotationDbi
updated 12 months ago by 68k • written 12 months ago by ▴ 10
0
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3
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774
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DESeq2 - Comparing Comparisons
DESeq2
updated 12 months ago by 68k • written 12 months ago by • 0
0
votes
0
replies
298
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Confidence interval contains 0 but p<0.05
MAST
12 months ago Adelyn • 0
0
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4
replies
950
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lfcShrink and alpha value
lfcShrink DESeq2
13 months ago • updated 12 months ago anon • 0
0
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0
replies
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Pathway abundance data from Curatedmetagenomics
curatedMetagenomicData ExperimentHubData
12 months ago Edward • 0
1
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4
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954
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pathview - multiple states
pathview Pathways KEGG
12 months ago Philippine • 0
2
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5
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scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
scuttle
updated 12 months ago by ★ 29k • written 12 months ago by ▴ 10
1
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2
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743
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contrast matrix design for a continuous variable
limma
12 months ago • updated 11 months ago dtzhu337 • 0
2
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1
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754
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DESeq2- merging technical vs biological replicates
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updated 12 months ago by 43k • written 13 months ago by • 0
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