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Spam:
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proDA
org.Sc.sgd.db
TVTB
11 months ago
Abu
0
0
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0
replies
10
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Spam:
Maxwinbet77 | Popularitas Slot Deposit Ovo 5000 Naik Meningkat & Menguntungkan
JobPosting
customCMPdb
TransOmicsData
11 months ago
Abu
0
0
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0
replies
12
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Spam:
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GOTHiC
BubbleTree
PANR
11 months ago
Abu
0
0
votes
1
reply
829
views
KEGG GSEA using Clusterprofiler - ncbi-geneid missing?
clusterProfiler
KEGG
11 months ago
Jessica
• 0
0
votes
0
replies
558
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
11 months ago
Maria Doyle
▴ 110
0
votes
1
reply
479
views
Comparing Mock vs Infected in WT and Knockout Cells
DESeq2
DifferentialExpression
DifferentialRegulation
RNASeq
GeneSetEnrichment
updated 11 months ago by
Michael Love
43k • written 11 months ago by
Sahil
• 0
0
votes
1
reply
868
views
In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowick TomType
WGCNA
pickSoftThreshold
SignedNowick
updated 11 months ago by
ATpoint
★ 5.0k • written 11 months ago by
ddrummer0056
• 0
0
votes
1
reply
480
views
Error: lexical error: invalid char in json text (alevin-seurat)
tximpo
tximportData
alevinQC
updated 11 months ago by
ATpoint
★ 5.0k • written 11 months ago by
ptlsugam
• 0
0
votes
0
replies
251
views
Help with MetagenomeSeq, understanding the 75th quantile
metagenomeSeq
cumulativesumscaling
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
boone5jones
• 0
0
votes
0
replies
378
views
Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf
minfiDataEPIC
MethylationArrayData
MethylationArray
EPICv2manifest
11 months ago
charlie.wright
• 0
0
votes
3
replies
907
views
DESeq2 adujsted p-value cutoff seemingly not working
DESeq2
updated 11 months ago by
980linnet
• 0 • written 11 months ago by
Guilherme
• 0
0
votes
4
replies
760
views
Web accessibility of Bioconductor.org
website
Website
updated 11 months ago by
Sean Davis
21k • written 11 months ago by
lizhare
• 0
1
vote
2
replies
1.4k
views
Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = IntersectionNotEmpty)
GenomicAlignments
summarizeOverlaps(
Smart-seq2
proteinvariantcounting
11 months ago
SofieK
• 0
0
votes
2
replies
613
views
Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis
Normalization
Epigenetics
MethylationArrayData
11 months ago
a.alkema
• 0
0
votes
2
replies
964
views
accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
DESeq2
updated 11 months ago by
Blair
• 0 • written 11 months ago by
A
• 0
0
votes
3
replies
651
views
displaying the differential expression with deseq2 over 4X2 samples with the individual changes in gene expression per sample
DESeq2
updated 11 months ago by
Leonard
• 0 • written 11 months ago by
Martijn
• 0
0
votes
3
replies
1.1k
views
How to compare expression levels of genes between scRNAseq and bulkRNAseq?
Seurat
RNASeq
DESeq2
scRNAseq
updated 11 months ago by
jodan
• 0 • written 12 months ago by
Quang NN
▴ 10
5
votes
5
replies
2.7k
views
Unused arguments error without used arguments in GSVA?
GSVA
updated 10 months ago by
michaelarringtony
• 0 • written 12 months ago by
1sunmic2
• 0
0
votes
1
reply
1.3k
views
Using genomicRanges / plyranges to calculate score of peaks within intervals
plyranges
GenomicRanges
updated 11 months ago by
Michael Love
43k • written 4.7 years ago by
alorsonmethyle
• 0
1
vote
1
reply
2.1k
views
Reducing and aggregating GRanges with gaps using plyranges
GenomicRanges
plyranges
updated 11 months ago by
Michael Love
43k • written 5.3 years ago by
r.a.policastro
• 0
4
votes
3
replies
672
views
plyranges: find exact GRanges match keeping metadata columns
plyranges
updated 11 months ago by
Michael Love
43k • written 11 months ago by
alexis.weinreb
• 0
0
votes
0
replies
451
views
News:
Mass Spectrometry and Proteomics with R/Bioconductor course
cadd.v1.6.hg38
11 months ago
info
▴ 10
0
votes
1
reply
477
views
Restricting differential binding analysis to only TSS-proximal regions
ChIP
csaw
updated 11 months ago by
Aaron Lun
★ 29k • written 12 months ago by
Luca
• 0
0
votes
0
replies
309
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
12 months ago
User3088
• 0
0
votes
0
replies
329
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
12 months ago
Maria Doyle
▴ 110
0
votes
1
reply
499
views
building samplesheet and plot profile
DiffBind
12 months ago • updated 11 months ago
yf
• 0
0
votes
0
replies
226
views
DBT JRF & PhD Scholar
BiologicalQuestion
OmicsMLRepoR
12 months ago
Manisha
• 0
0
votes
1
reply
463
views
I am having issues with bowtie2_build
genomes
bowtiew
Index
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
eduardo.pastor
• 0
0
votes
1
reply
740
views
DEG analysis across multiple timepoints, treatments and tissues
DifferentialExpression
RNASeq
DESeq2
updated 12 months ago by
Michael Love
43k • written 12 months ago by
Sim
• 0
0
votes
0
replies
401
views
My DEXSeqDataSetFromSE is returning an Error, but all of my checks to seem to indicate that this error is not present
DifferentialSplicing
RNASeqData
DEXSeq
12 months ago
cftattersfield
• 0
1
vote
0
replies
682
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
12 months ago
Maria Doyle
▴ 110
0
votes
2
replies
1.0k
views
How to visualize these pathways using pathview
Salmo_salar
RNASeq
KEGG
pathview
12 months ago • updated 11 months ago
ingrid.h
• 0
2
votes
2
replies
761
views
Selection of correct coefficients or contrasts in DESeq2
DESeq2
updated 12 months ago by
swbarnes2
★ 1.4k • written 12 months ago by
Nathan
• 0
9
votes
3
replies
2.7k
views
Job:
Postdoc/RA position: Software Engineer For R and High-Performance Computing
JobPosting
CuratedAtlasQueryR
tidySpatialExperiment
tidyomics
tidySingleCellExperiment
written 19 months ago by
Stefano Mangiola
▴ 40
0
votes
4
replies
1.5k
views
Why select top highly expressed genes based on normalized counts, but then plot VST-transformed values in DESeq2 pheatmap?
RNASeq
DESeq2
12 months ago
Quang NN
▴ 10
1
vote
3
replies
1.3k
views
Csaw normalization strategies - general inquiry
ChIPSeq
csaw
updated 12 months ago by
franknappi14
• 0 • written 12 months ago by
Luca
• 0
4
votes
9
replies
3.2k
views
Issues with seqlevelsStyle when making custom txdb objects for genomes/annotations from ToxoDB
txdbmaker
GenomeInfoDb
GenomicFeatures
Biostrings
gDNAx
updated 12 months ago by
Robert Castelo
★ 3.4k • written 13 months ago by
rohitsatyam102
▴ 20
0
votes
1
reply
696
views
WGCNA sample-data preprocessing order
Microarray
WGCNA
GeneExpression
updated 12 months ago by
ATpoint
★ 5.0k • written 12 months ago by
Reuben
• 0
0
votes
2
replies
646
views
WGCNA: Can we use high power (26) for signed network?
Networkanalysis
RNA-seqdata
Powerselection
WGCNA
12 months ago
Vinesh
• 0
0
votes
1
reply
380
views
Ph.D. scholar
WGCNA
DataNormalization
MicroarrayData
updated 12 months ago by
ATpoint
★ 5.0k • written 12 months ago by
Harshul
• 0
0
votes
1
reply
422
views
Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray
MethylationArrayData
methylationArrayAnalysis
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
Anki
• 0
0
votes
2
replies
1.6k
views
How to generate circular cnetplot and color nodes and edges in the same plot ?
cnetplot
DESeq2
12 months ago
Blandine
• 0
0
votes
5
replies
805
views
Is there a way to do DEG analysis across two batches sharing one sample only?
DESeq2
DifferentialExpression
RNASeqData
BatchEffect
written 12 months ago by
georgeyu703
• 0
0
votes
1
reply
497
views
affymetrix
genomes
Annotation
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
aurel.popa2011
• 0
0
votes
1
reply
2.3k
views
Problems with GSEA
GSEABase
updated 12 months ago by
Guido Hooiveld
★ 4.1k • written 12 months ago by
Sidra.Gull
• 0
0
votes
1
reply
577
views
Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19)
Rbowtie
12 months ago
ja.garcia
• 0
0
votes
4
replies
1.2k
views
How to sort negative log2FC or FC in RNAseq for GSEA?
DESeq2
GSEA
clusterProfiler
12 months ago
Quang NN
▴ 10
2
votes
4
replies
1.1k
views
EdgeR Biological CVs
edgeR
written 12 months ago by
James
• 0
0
votes
1
reply
561
views
Curiously shaped volcano plot with using oarfish + swish to do differential gene expression on long-read RNA-seq
fishpond
fish
updated 12 months ago by
Michael Love
43k • written 12 months ago by
brown.annaleigh
• 0
0
votes
0
replies
286
views
Problem with PCAtool as dependencie
COTAN
PCAtools
12 months ago
Silvia
• 0
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