3
votes
2
replies
6.5k
views
limma duplicateCorrelation appropriate where some blocks cross condition and some are in same condition?
limma
8 months ago Geoff • 0
0
votes
1
reply
911
views
Workflow to Analyse DNA Sequence specify gene expression in a fungus under stress
rnaseqGene
updated 8 months ago by 43k • written 8 months ago by • 0
0
votes
1
reply
484
views
Unclear DEseq2 replaceOutliers error message
DESeq2
updated 8 months ago by 43k • written 8 months ago by • 0
0
votes
1
reply
547
views
lncRNA functional annotation package
RNAseq123
updated 8 months ago by 68k • written 8 months ago by • 0
1
vote
1
reply
719
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
0
replies
9
views
Spam: Best Piles Clinic in Hyderabad
cadd.v1.6.hg38 BestPilesClinicinHyderabad hcg110.db MethylSeekR
8 months ago Laserqure03 0
0
votes
2
replies
1.9k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
written 21.9 years ago by ▴ 30
0
votes
1
reply
646
views
Difference in DESeq2 output and tidybulk DESeq2 method
DifferentialExpression DESeq2 tidybulk RNASeq
updated 8 months ago by 43k • written 8 months ago by • 0
3
votes
2
replies
2.1k
views
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
DESeq2
8 months ago dudutchy ▴ 10
0
votes
8
replies
1.6k
views
ERCC Spike-In controls being discarded during Tximeta process:
@mikelove tximeta
updated 8 months ago by 43k • written 8 months ago by • 0
2
votes
4
replies
2.7k
views
Altered (negative or positive) logFC values for same gene from two intitial count matrices, one being a subset of the other
Transcriptomics edgeR DEG
8 months ago Maziya • 0
4
votes
17
replies
6.3k
views
How to load scRNA-seq data from GEO
SingleCellExperiment GEO
updated 8 months ago by ★ 5.0k • written 8 months ago by ▴ 10
2
votes
3
replies
1.6k
views
Differential gene expression analysis on haplotype-resolved diploid assembly
edgeR DESeq2 haplotype limma
8 months ago Paulito • 0
0
votes
1
reply
692
views
Using EBI Image on Ranged Bar Chart
EBImage
written 8 months ago by • 0
1
vote
3
replies
1.3k
views
Possible issue following the logNormCounts(filtered) with resulted fit
single-cell SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData
8 months ago Konstantinos Yeles ▴ 90
0
votes
2
replies
957
views
edgeR in DMR mode - replicates give batch effect - how to build design matrix with condition and replicate
edgeR
updated 8 months ago by ▴ 110 • written 8 months ago by • 0
0
votes
2
replies
624
views
GBCC2025: New Scholarship Opportunities Available!
Community Conference GBCC2025 Bioconductor
updated 5 months ago by • 0 • written 8 months ago by ▴ 110
0
votes
0
replies
335
views
Blank gene_id in featureCounts
featureCounts Rsubread
8 months ago Meg • 0
2
votes
5
replies
1.7k
views
Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 8 months ago by ▴ 110 • written 8 months ago by ▴ 10
0
votes
1
reply
593
views
FCS 32 support going backwards?
flowCore
updated 8 months ago by • 0 • written 8 months ago by • 0
0
votes
1
reply
522
views
Typo in the help of lmFit()
limma
updated 8 months ago by 53k • written 8 months ago by • 0
0
votes
2
replies
1.1k
views
Memory issue while using "quickcluster" and "computeSumFactors" functions on single cell RNA seq dataset with 7-9 lac cells
scran
updated 8 months ago by ★ 5.0k • written 8 months ago by • 0
4
votes
4
replies
2.2k
views
Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatmap
DESeq2 ComplexHeatmap
8 months ago caroline.zanchi ▴ 10
0
votes
2
replies
729
views
Limma suqeezeVar
limma
8 months ago Mengchun • 0
0
votes
0
replies
391
views
What Input-type do I use in decouplR::run_viper?
decoupleR viper
updated 8 months ago by 43k • written 8 months ago by • 0
0
votes
2
replies
1.5k
views
Limma trend with limpa
limpa limma trend
updated 8 months ago by 53k • written 8 months ago by • 0
0
votes
1
reply
483
views
DESeq2 from phyloseq error
DESeq2 phyloseq
8 months ago asafpr • 0
0
votes
0
replies
365
views
Combining COMBAT-seq result (raw count) with other raw count
rnaseq combat-seq sva combat bulk-rnaseq
8 months ago dudwnsrla1 • 0
0
votes
1
reply
589
views
Can't install BioC packages (and manager) behind firewall
Install
updated 8 months ago by 700 • written 8 months ago by • 0
1
vote
2
replies
1.7k
views
GSVA 1.52.2 (new API) nb of workers?
parallelize workers GSVA
written 19 months ago by • 0
0
votes
2
replies
597
views
How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignments?
GenomicAlignments
updated 8 months ago by 16k • written 8 months ago by • 0
4
votes
2
replies
1.5k
views
GAlignments Cigar to GRanges
GenomicRanges cigarRangesAlongReferenceSpace GenomicAlignments Cigar
8 months ago pineiroalejandro ▴ 10
3
votes
3
replies
722
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub HubPub ExperimentHub
updated 8 months ago by 68k • written 8 months ago by ▴ 50
6
votes
8
replies
5.9k
views
WGCNA coupled with differential expression analysis: question about baseline module detection
wgcna WGCNA
written 5.8 years ago by ▴ 60
3
votes
1
reply
712
views
DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
DESeq2 apeglm
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
0
replies
1.1k
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq profileplyr DiffBind
8 months ago Muhammad • 0
0
votes
0
replies
11
views
Spam: County Group Wave City Ghaziabad
ri16cod.db ncdfFlow
8 months ago countywavecityghaziabad 0
1
vote
5
replies
1.6k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 8 months ago by 68k • written 8 months ago by ▴ 10
0
votes
1
reply
440
views
Error in readCodelinkSet function
error codelink
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
1
reply
819
views
Combat-seq usage
sva
8 months ago bbao ▴ 10
0
votes
1
reply
530
views
Best tximport quant.genes.sf
tximport tximeta Bioconductor
updated 8 months ago by ★ 5.0k • written 8 months ago by • 0
0
votes
1
reply
457
views
What happened to the Joost2016 dataset
org.Sc.sgd.db
updated 8 months ago by 4.3k • written 8 months ago by • 0
2
votes
5
replies
1.4k
views
Dealing with heteroscedascity in limma
limma splines Proteomics
written 8 months ago by • 0
0
votes
3
replies
54k
views
SingleR Label.Ont
SingleR
written 2.4 years ago by • 0
5
votes
7
replies
3.5k
views
limma correction for tumor purity
limma
8 months ago gabriella.jacobson-eisenberg ▴ 20
0
votes
1
reply
603
views
Filtering out non-variable probes from EPICv2 matrix
DMRcate EPICv2manifest
updated 8 months ago by 68k • written 9 months ago by • 0
0
votes
2
replies
798
views
FlowSOM is unable to create Output
FlowSOM
updated 8 months ago by • 0 • written 8 months ago by • 0
9
votes
3
replies
3.3k
views
DESeq2 class error: superclass "ExpData" not defined in the environment of the object's class
DESeq2
updated 8 months ago by 43k • written 8 months ago by ▴ 40
0
votes
5
replies
946
views
Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
TxDb.Mmusculus.UCSC.mm10.knownGene
written 10 months ago by ▴ 140
2
votes
4
replies
1.9k
views
Filtering after DESeq
DESeq2 IHW
written 9 months ago by ▴ 10
1,000 results • Page 6 of 20
Recent ...
Replies
Comment: ChAMP trouble reading csv file by fnfunkin • 0
I tried following the code, but it seems to have some kind of error that I can't find. Sorry, I'm a beginner. [fnf][1] [1]: https://fnf…
Comment: The BioC2026 Sticker Design Contest is Open! by Tikaaaaaq2c • 0
This is a fantastic opportunity for the creative minds in our community to showcase their talent. While many of us are busy exploring the l…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Awards • All
Popular Question to James W. MacDonald 68k
Popular Question to James Aiden • 0
Popular Question to shepherl 4.3k
Popular Question to fl ▴ 20
Voter to SamGG ▴ 360
Locations • All
United States, 9 minutes ago
United States, 10 minutes ago
Switzerland, 11 minutes ago
United States, 13 minutes ago
United States, 31 minutes ago
Traffic: 1890 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6