Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
564
views
The upcoming release: how you might be able to help
Cancer
PROcess
Cancer
PROcess
20.6 years ago
A.J. Rossini
▴ 810
0
votes
0
replies
1.4k
views
Ballgown data processing error
Ballgown
Stringtie
DEG
rnaseq
6.0 years ago
vharshavardhanan
• 0
0
votes
0
replies
773
views
[Fwd: Problem installing RMAGEML]
RMAGEML
RMAGEML
14.6 years ago
Md.Mamunur Rashid
▴ 260
0
votes
0
replies
927
views
ChIPpeakAnno Paper - Example Dataset not found
Transcription
ChIPSeq
Annotation
chipseq
genomes
Transcription
ChIPSeq
Annotation
chipseq
13.9 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.1k
views
回复: XVector
Network
Cancer
IRanges
XVector
9.7 years ago
Hervé Pagès
16k
0
votes
0
replies
702
views
[Fwd: Reporting problem with annotation in biomaRt, Illumina arrays]
Annotation
probe
biomaRt
Annotation
probe
biomaRt
15.3 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
710
views
help about the GEOquery, Thanks.
GEOquery
GEOquery
13.6 years ago
Sean Davis
21k
0
votes
0
replies
1.2k
views
flowviz
flowViz
9.7 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
1.3k
views
qPCR Event Calendar - winter 2010
SNP
qPCR
Genetics
Normalization
Clustering
Regression
Cancer
Breast
Xenopus laevis
probe
13.5 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
0
replies
1.1k
views
Affymetrix HTA 2 array analysis
Cancer
Breast
Cancer
Breast
11.1 years ago
Steven McKinney
▴ 310
0
votes
0
replies
823
views
DESeq with 3 sample types
miRNA
miRNA
11.6 years ago
Sole Acha, Xavi
▴ 110
0
votes
0
replies
546
views
RNA/gDNA normalizations
20.2 years ago
Maria Fookes
▴ 30
0
votes
0
replies
543
views
Package gpls_1.24.0.tar.gz has been built for Windows
13.1 years ago
Uwe.Ligges@r-project.org
▴ 120
0
votes
0
replies
1.5k
views
Re: KEGGprofile: "Error in phyper - Non-numeric argument to mathematical function" when using non model organism
Organism
KEGGprofile
9.7 years ago
zhao shilin
▴ 60
3
votes
9
replies
2.9k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
9.7 years ago
artur
▴ 80
0
votes
0
replies
862
views
Bumphunter Output Details
bumphunter
9.1 years ago
andrew.j.skelton73
▴ 370
0
votes
0
replies
620
views
Debian packages unavailable temporarily
Cancer
Cancer
20.4 years ago
A.J. Rossini
▴ 810
0
votes
0
replies
4.0k
views
Limma for DNA methylation arrays?
Normalization
probe
limma
minfi
Normalization
probe
limma
minfi
10.5 years ago
Gustavo Fernández Bayón
▴ 440
0
votes
1
reply
913
views
a problem from import CTSStable in CAGEr
cager
CAGEr
5.5 years ago
Zhong JW
• 0
0
votes
0
replies
1.3k
views
job advertisement
Genetics
Alignment
Visualization
Genetics
Alignment
Visualization
10.8 years ago
Zhenyu Xu
▴ 10
0
votes
0
replies
1.2k
views
error in "count" for SummarizedExperiment in easyRNASeq
easyRNASeq
DESeq2
easyRNASeq
DESeq2
10.7 years ago
Lescai, Francesco
▴ 380
0
votes
0
replies
1.2k
views
[devteam-bioc] Why does a GOAllFrame contain more rows than its argument GoFrame?
Annotation
GO
Organism
AnnotationDbi
Annotation
GO
Organism
AnnotationDbi
10.6 years ago
Marc Carlson
★ 7.2k
2
votes
8
replies
2.4k
views
Reading HDF5 Files In The Cloud
Rhdf5lib
rhdf5
3.2 years ago • updated 9 months ago
Thomas Sandmann
▴ 90
0
votes
0
replies
551
views
marrayClass - how to extract expr values for a gene
20.6 years ago
Naomi Altman
★ 6.0k
0
votes
4
replies
1.3k
views
segfault "memory not mapped" using align from Rsubread
Rsubread
align
4.2 years ago
Joseph Fass
▴ 70
0
votes
0
replies
719
views
HTqPCR with mixed template
HTqPCR
HTqPCR
11.0 years ago
Penny, Susanne
▴ 10
0
votes
0
replies
945
views
USAR2009 ***R/R-PLUS/S Conference Announcement & Call For Papers - Las Vegas, USA
15.5 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
0
replies
575
views
diffbind: use of continuous variables
diffbind
deseq2
5.3 years ago
janani.sundaresan
• 0
0
votes
0
replies
953
views
Limma design multi-level experiment with 3 time points
R
proteomics
limma
3.2 years ago
ellen2270
• 0
0
votes
0
replies
1.7k
views
norm.qpcr issue - "Error in R[i] <- Symbols[ind] : replacement has length zero"
norm.qpcr microrna troubleshooting
6.3 years ago
leet
• 0
0
votes
0
replies
954
views
Error while executing ComBat from sva library in bioconductor
probe
sva
probe
sva
10.9 years ago
W. Evan Johnson
▴ 850
0
votes
0
replies
949
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
6.1 years ago
fawazfebin
▴ 60
0
votes
0
replies
626
views
Course - March/April ** R / Splus ** course in New York City and San Francisco*** by XLSolutions Corp
15.2 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
0
replies
928
views
Re: R-1.5
Biobase
affy
Biobase
affy
22.1 years ago
Anthony Rossini
▴ 530
0
votes
0
replies
1.4k
views
help with cleanUpdTSeq for PAS analysis
Normalization
Clustering
convert
cleanUpdTSeq
Normalization
Clustering
convert
cleanUpdTSeq
10.7 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.2k
views
miRNA exiqon panels and HTqPCR
miRNA
qPCR
PROcess
HTqPCR
miRNA
qPCR
PROcess
HTqPCR
11.9 years ago
Heidi Dvinge
★ 2.0k
0
votes
0
replies
569
views
Donate for text link
14.9 years ago
Martin Kicko
▴ 10
0
votes
0
replies
727
views
Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
RdbiPgSQL
PROcess
RdbiPgSQL
PROcess
13.2 years ago
Aszodi,Andras
▴ 30
0
votes
0
replies
914
views
spiked controls wrong order on samples wit 2 rounds of amplification normalize with GCRMA
Microarray
Cancer
affy
gcrma
affyPLM
Microarray
Cancer
affy
gcrma
affyPLM
15.7 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
1.4k
views
ChIPpeakAnno
SNP
Annotation
annotate
convert
SNP
Annotation
annotate
convert
9.8 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.2k
views
FOSBE 2012
SANTA
SANTA
12.0 years ago
mabawsa
▴ 20
0
votes
1
reply
707
views
TPP and NPARC: A problem about the conversion of data frame.
TPP
NPARC
updated 3.5 years ago by
nils.kurzawa
▴ 20 • written 3.5 years ago by
yangwanqi
• 0
0
votes
0
replies
719
views
FourCSeq: Error in getZScores
fourcseq
getzscores
6.1 years ago
Gustavo Ruiz
• 0
0
votes
0
replies
2.9k
views
minOverlap in DiffBind in R- what does it mean?
DiffBind
DiffBind
10.3 years ago
Rory Stark
★ 5.2k
0
votes
0
replies
981
views
Question regarding MADE4 graphs
Cancer
made4
Cancer
made4
12.0 years ago
Aedin Culhane
▴ 510
0
votes
1
reply
1.4k
views
dendextend: color_branches not working for certain hclust methods
dendextend
7.2 years ago
Zach Roe
▴ 10
2
votes
0
replies
1.9k
views
'Error in summary(lm1)$coefficients[2, 1] : subscript out of bounds' while running pickSoftThreshold in WGCNA
wgcna
picksoftthreshold
6.1 years ago
aditi
▴ 20
0
votes
0
replies
1.3k
views
Postdoctoral Position in Statistical Genomics - Zurich
ASSET
ASSET
12.6 years ago
Mark Robinson
▴ 880
0
votes
0
replies
502
views
Array weights in the 'removeBatchEffect' function?
Clustering
limma
Clustering
limma
12.1 years ago
Gordon Smyth
50k
0
votes
0
replies
1.3k
views
Please help with ballgown problem
ballgown
differential expression
7.2 years ago
Sara
▴ 10
1,000 results • Page
3 of 20
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Koen Van den Berge
▴ 180
Popular Question
to
shepherl
3.9k
Popular Question
to
Ken C
• 0
Locations
• All
Germany,
14 minutes ago
Slovakia,
28 minutes ago
WEHI, Melbourne, Australia,
35 minutes ago
Pakistan,
37 minutes ago
Hong Kong,
56 minutes ago
Traffic: 405 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6