Showing : ATACseq • reset
0
votes
0
replies
29
views
ATACseq rudimentary questions
ATACSeq DiffBind
1 day ago 4747 • 0
0
votes
4
replies
2.4k
views
DiffBind can't find a DAR
dar ATACSeq DiffBind
8 months ago Mengjun • 0
0
votes
0
replies
373
views
News: Introduction to Epigenomics data analysis with R and Bioconductor course (online) - 14th-18th April
chipseq MNaseSeq ATACSeq
9 months ago • updated 8 months ago info ▴ 10
0
votes
1
reply
958
views
Spike-in normalization method in ATACseq
sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn
updated 14 months ago by ★ 5.0k • written 14 months ago by • 0
0
votes
0
replies
422
views
diffbind covariates
DiffBind ATACSeq
updated 14 months ago by 43k • written 14 months ago by ▴ 220
2
votes
5
replies
1.2k
views
Trying to convert ATACseq annotations of non-model species into human orthologs, but not sure of what to do.
genomes ATACSeq
15 months ago ronin • 0
0
votes
0
replies
1.1k
views
FindOverlaps, makeVennDiagram and "others"
ATACSeq peaks ATAC ChIPpeakAnno
19 months ago Raghad • 0
0
votes
4
replies
982
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
20 months ago lonn • 0
0
votes
0
replies
641
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
21 months ago Pierre Lindenbaum ▴ 10
0
votes
1
reply
1.1k
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
23 months ago isaromero8888 • 0
0
votes
0
replies
961
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
23 months ago Jawahar • 0
0
votes
0
replies
694
views
ATACseq- Counts around TSS plot
DiffBind ATACSeq
2.0 years ago inna.gur • 0
0
votes
7
replies
1.8k
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 22 months ago by ▴ 10 • written 2.1 years ago by • 0
0
votes
0
replies
980
views
DiffBind dba.count() crash/can't finish problems
dba.count DiffBind ATACSeq
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
votes
2
replies
2.0k
views
DiffBind dropping peaks in ATAC-seq data
DiffBind ATACSeq
updated 2.4 years ago by ★ 1.6k • written 2.4 years ago by • 0
4
votes
6
replies
1.8k
views
Positive and negative value fold value in ATAC seq using DiffBind
DiffBind ATACSeq
2.7 years ago Chris ▴ 20
5
votes
8
replies
1.9k
views
Help with error install csaw
ChIPSeq ATACSeq
written 2.8 years ago by ▴ 20
3
votes
5
replies
1.6k
views
How to annotate genes from results of DiffBind
ATACSeq
updated 2.7 years ago by 68k • written 2.7 years ago by ▴ 20
8
votes
13
replies
5.5k
views
Help with Error in DiffBind
DiffBind ATACSeq
2.8 years ago • updated 2.7 years ago Chris ▴ 20
2
votes
1
reply
4.3k
views
DiffBind on ATAC seq data
ATACSeq
updated 2.8 years ago by ★ 5.2k • written 2.8 years ago by ▴ 20
0
votes
1
reply
1.2k
views
DiffBind- differentiate between new peaks and gain peaks
ATAC DiffBind ATACSeq
updated 2.9 years ago by ★ 5.2k • written 2.9 years ago by • 0
0
votes
1
reply
1.1k
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 3.0 years ago by ★ 1.3k • written 3.0 years ago by • 0
0
votes
0
replies
1.2k
views
How we could calculate the sample size for ATAC seq and single cell RNA seq, respectively?
singlecellRNAseq ATACseq sample-size
3.1 years ago gogniu • 0
0
votes
2
replies
2.1k
views
long computing time for TSS enrichment score
ATACSeq
updated 2.4 years ago by • 0 • written 3.3 years ago by • 0
0
votes
0
replies
1.2k
views
Job: Postdoc position in integrated omics at Karolinska Institute, Stockholm
ATACSeq multiOmicsViz scRNAseq JobPosting
3.4 years ago Sebastian Lewandowski • 0
0
votes
1
reply
2.1k
views
Diffbind analysis of ATAC-seq data
ATACSeq DiffBind
updated 3.5 years ago by ★ 5.2k • written 3.5 years ago by • 0
2
votes
3
replies
1.6k
views
DiffBind always reverts to default normalization
ATACSeq Normalization DiffBind
3.7 years ago • updated 3.6 years ago bers.anthrope ▴ 10
1
vote
3
replies
2.5k
views
regionCounts() from csaw - object 'fancy_mseq' not found
ATACSeq regionCounts csaw
updated 2.1 years ago by • 0 • written 3.7 years ago by • 0
0
votes
0
replies
999
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
3.8 years ago hyjforesight • 0
2
votes
5
replies
6.9k
views
using DESeq2 for ATAC analyses
ATACSeq DESeq2
updated 3.4 years ago by ▴ 20 • written 4.2 years ago by ▴ 20
0
votes
3
replies
1.8k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 3.4 years ago by ★ 5.2k • written 4.2 years ago by ▴ 40
1
vote
3
replies
2.5k
views
Using block and design together in Diffbind 3.0?
DiffBind R ATACSeq
updated 4.4 years ago by ▴ 80 • written 4.4 years ago by • 0
5
votes
8
replies
3.4k
views
how to construct a DBA object from count matrix
ChIPSeq ATACSeq differentially_occupied DiffBind
updated 3.6 years ago by ▴ 20 • written 4.5 years ago by ▴ 30
1
vote
4
replies
2.3k
views
Binding matrix created by DiffBind
ATACSeq DiffBind
4.5 years ago sh.kazempour94 ▴ 10
2
votes
5
replies
5.7k
views
News: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr ATACSeq DiffBind ComplexHeatmap ChIPSeq
updated 3.0 years ago by • 0 • written 4.6 years ago by ★ 5.2k
0
votes
4
replies
2.1k
views
DiffBind
ATACSeq DiFFBind
4.7 years ago • updated 4.6 years ago Riba Michela ▴ 90
1
vote
5
replies
2.6k
views
How to add chr to an dba object before differential analysis to enable removing blacklisted regions
DiffBind ATACSeq
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
2
votes
4
replies
2.3k
views
DiffBind analysis for ATAC-Seq error Error processing one or more read files
ATACSeq DiffBind
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by • 0
1
vote
1
reply
2.3k
views
News: Extensive updates in DiffBind 3.0
Normalization ATACSeq ChIPSeq DiffBind chipseq
written 5.2 years ago by ★ 5.2k
1
vote
10
replies
4.0k
views
DiffBind for ATACseq without replicates
DiffBind ATACseq replicate
updated 5.1 years ago by ★ 5.2k • written 5.2 years ago by ▴ 70
0
votes
4
replies
3.0k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 5.3 years ago by ★ 1.3k • written 5.4 years ago by • 0
1
vote
2
replies
14k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by • 0
0
votes
7
replies
2.6k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 6.5 years ago by ★ 13k • written 6.5 years ago by • 0
0
votes
2
replies
1.8k
views
calculating TSS enrichment from ATACseq data
GenomicRanges Views ATACseq TSS
6.6 years ago tangming2005 ▴ 200
2
votes
1
reply
2.0k
views
Using DiffBind with only a counts table?
diffbind ATACseq ATAC counts differential analysis
updated 6.8 years ago by ★ 5.2k • written 6.8 years ago by ▴ 10
1
vote
2
replies
2.6k
views
DeSEQ2- What is the difference between Gene Clustering and using LRT for Time Series experiment WITHOUT treatments
deseq2 Time Series Gene Clustering LRT ATACseq
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
2
votes
4
replies
2.0k
views
DiffBind confuses coordinates of peaks
atacseq diffbind
updated 7.2 years ago by ★ 5.2k • written 7.3 years ago by ▴ 10
0
votes
2
replies
1.8k
views
mogsa on RNA-seq and ATAC-seq data
mogsa atacseq
updated 7.5 years ago by • 0 • written 7.6 years ago by ▴ 30
48 results • Page 1 of 1
Recent ...
Replies
Answer: blockwiseModule crashes in the end and doesn't generate modules by Daniel • 0
Queria compartir mi experiencia con [https://jugabet.cl/football/live/1][1] . Esta seccion ofrece cobertura en vivo de futbol, con marcado…
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes by TikTsokaasocissalpc • 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Votes
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Popular Question to Dario Strbenac ★ 1.6k
Locations • All
Ireland, 1 hour ago
The city by the bay, 2 hours ago
United States, 2 hours ago
Ukraine, 3 hours ago
United States, 3 hours ago
Traffic: 1253 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6