Showing : ArrayExpress • reset
6
votes
5
replies
4.6k
views
How to analyze correctly agilent two-colour microarray data from the ArrayExpress repository with the limma R package
agilent microarrays limma arrayexpress NChannelSet
updated 7.5 years ago by 53k • written 7.5 years ago by ▴ 840
4
votes
5
replies
2.9k
views
time course microarray data ArrayExpress database
R GillespieColin ArrayExpress import TimeSeriesExperiment
updated 2.4 years ago by ▴ 40 • written 3.4 years ago by ▴ 20
4
votes
1
reply
2.2k
views
Mismatched ArrayExpress microarray annotation package
arrayexpress ArrayExpress hthgu133a.db
8.7 years ago sandmann.t ▴ 70
4
votes
2
replies
2.0k
views
TargetsFile. Where it is?
Limma ArrayExpress GEO
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
3
votes
4
replies
4.4k
views
lm.fit incompatible dimensions
oligo arrayexpress limma
updated 6.1 years ago by • 0 • written 7.2 years ago by • 0
3
votes
2
replies
1.8k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 4.9 years ago by 53k • written 4.9 years ago by • 0
3
votes
6
replies
4.0k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress xml rcurl http EBI
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 610
2
votes
1
reply
661
views
Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 15 months ago by 68k • written 15 months ago by • 0
2
votes
2
replies
1.7k
views
limma - removing samples?
ArrayExpress limma arrays
4.8 years ago RMP87 • 0
2
votes
2
replies
1.4k
views
Simple queryAE command returning "Error: 1: Document is empty"
queryAE ArrayExpress
3.3 years ago alekeuro ▴ 10
2
votes
3
replies
2.3k
views
Could not access the Bioconductor repository
bioconductor proxy arrayexpress
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
2
votes
3
replies
4.0k
views
ArrayExpress unable to find raw data: "Experiment has no raw files available"
arrayexpress
updated 9.3 years ago by ▴ 20 • written 9.3 years ago by ▴ 180
2
votes
1
reply
1.7k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 9.1 years ago by 68k • written 9.1 years ago by • 0
2
votes
0
replies
1.6k
views
Fix for queryAE() in the ArrayExpress package
ArrayExpress ArrayExpress
13.0 years ago Ibrahim Emam ▴ 50
1
vote
4
replies
3.4k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 7.9 years ago by 21k • written 7.9 years ago by ▴ 10
1
vote
1
reply
1.9k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
1
vote
1
reply
1.5k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 8.0 years ago by 53k • written 8.0 years ago by • 0
0
votes
1
reply
1.2k
views
making ExpressionSet from ArrayExpress
convert ArrayExpress convert ArrayExpress
updated 19.2 years ago by ▴ 580 • written 19.2 years ago by ★ 13k
0
votes
0
replies
1.5k
views
Software Engineer Position at the EBI, Cambridge UK
Microarray GUI ArrayExpress Microarray GUI ArrayExpress
19.6 years ago Misha Kapushesky ▴ 130
0
votes
0
replies
815
views
Re; MAGEML
ArrayExpress ArrayExpress
22.4 years ago Steffen Durinck ▴ 420
0
votes
0
replies
1.1k
views
breast tissue cel files
hgu133a ArrayExpress hgu133a ArrayExpress
19.7 years ago Rafael A. Irizarry ★ 2.3k
0
votes
0
replies
999
views
CEL files of ALL data set
ArrayExpress ArrayExpress
17.4 years ago Talloen, Willem [PRDBE] ▴ 10
0
votes
1
reply
1.3k
views
Reg: Reading SMD data using ArrayExpress pacakage
ArrayExpress ArrayExpress
updated 15.8 years ago by ▴ 60 • written 15.8 years ago by ▴ 170
0
votes
1
reply
1.1k
views
About ArrayExpress MAGE-TAB tools
Microarray ArrayExpress Microarray ArrayExpress
updated 17.5 years ago by 21k • written 17.5 years ago by ★ 2.0k
0
votes
4
replies
1.5k
views
Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Annotation Normalization Cancer limma ArrayExpress Annotation Normalization Cancer limma
updated 17.4 years ago by ▴ 30 • written 17.4 years ago by 53k
0
votes
0
replies
997
views
CEL files of ALL data set
ArrayExpress ArrayExpress
17.4 years ago Joern Toedling ▴ 730
0
votes
0
replies
1.3k
views
CAMDA08 Announcement. Deadline extension
Microarray ArrayExpress Microarray ArrayExpress
17.4 years ago Ana Conesa ▴ 340
0
votes
1
reply
1.3k
views
Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Annotation Normalization GO Cancer limma ArrayExpress Annotation Normalization GO Cancer
updated 17.4 years ago by ▴ 280 • written 17.4 years ago by 53k
0
votes
0
replies
1.3k
views
CAMDA conference program announcement / early booking discount until 12 Nov!
Microarray ArrayExpress Microarray ArrayExpress
17.3 years ago Dr. D. P. Kreil Boku ▴ 50
0
votes
1
reply
1.5k
views
ArrayExpress package error
ArrayExpress ArrayExpress
updated 17.3 years ago by ▴ 280 • written 17.3 years ago by ▴ 600
0
votes
1
reply
1.6k
views
CodeLink Package: Not a Codelink exported file.
codelink ArrayExpress codelink ArrayExpress
updated 19.9 years ago by ▴ 760 • written 19.9 years ago by ▴ 600
0
votes
0
replies
794
views
Re:MAGEML
ArrayExpress ArrayExpress
22.4 years ago Steffen Durinck ▴ 30
0
votes
0
replies
1.2k
views
RMAGEML installation and ArrayExpress database
RMAGEML ArrayExpress RMAGEML ArrayExpress
17.5 years ago John Lande ▴ 280
0
votes
2
replies
2.0k
views
Importing "Detailed sample annotation" from ArrayExpress DB into R
ArrayExpress ArrayExpress
17.5 years ago Markus Schmidberger ▴ 380
0
votes
0
replies
762
views
Fwd: Limma: How to read gene list, coordinates of sport when NO GAL file available
limma ArrayExpress limma ArrayExpress
19.9 years ago Gordon Smyth 53k
0
votes
1
reply
1.1k
views
An importMAGEML problem in RMAGEML Package
RMAGEML ArrayExpress RMAGEML ArrayExpress
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 10
0
votes
1
reply
1.4k
views
ArrayExpress error attaching phenodata
ArrayExpress ArrayExpress
updated 16.3 years ago by ▴ 280 • written 16.3 years ago by ★ 1.3k
0
votes
1
reply
1.4k
views
How to get platform annotation in ExpressionSet object
Annotation ArrayExpress Annotation ArrayExpress
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 30
0
votes
0
replies
1.7k
views
Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
14.4 years ago Claude Chelala ▴ 40
0
votes
0
replies
747
views
Limma: How to read gene list, coordinates of sport when NO GAL file available
limma ArrayExpress limma ArrayExpress
19.9 years ago Gordon Smyth 53k
0
votes
2
replies
1.3k
views
Annotating Illumina Data from ArrayExpress
convert ArrayExpress convert ArrayExpress
updated 16.3 years ago by ★ 7.2k • written 16.3 years ago by ▴ 260
0
votes
0
replies
986
views
Hapmap miRNA expression data
miRNA HapMap ArrayExpress miRNA HapMap ArrayExpress
16.3 years ago Paul Geeleher ★ 1.3k
0
votes
3
replies
1.6k
views
Reg: normalization of ArrayExpress data
Microarray Normalization GO ArrayExpress Microarray Normalization GO ArrayExpress
16.0 years ago Rohit Farmer ▴ 170
0
votes
1
reply
1.2k
views
Query regarding GEO Database
ArrayExpress ArrayExpress
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 120
0
votes
1
reply
1.1k
views
Unable to get the Platform Table using fData on eset object
ArrayExpress ArrayExpress
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 30
0
votes
0
replies
1.1k
views
ArrayExpress User Survey
ArrayExpress ArrayExpress
15.8 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.4k
views
mageml
ArrayExpress ArrayExpress
updated 22.4 years ago by 6.7k • written 22.4 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Reading SMD data in limma
limma ArrayExpress limma ArrayExpress
updated 15.7 years ago by ▴ 90 • written 15.8 years ago by ▴ 170
0
votes
2
replies
1.4k
views
Reading SMD data in limma
limma ArrayExpress limma ArrayExpress
15.8 years ago • updated 15.7 years ago Gordon Smyth 53k
0
votes
2
replies
1.5k
views
rma error on an affyBatch from ArrayExpress?
ArrayExpress ArrayExpress
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 90
101 results • Page 1 of 3
Recent ...
Replies
Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within by Pat • 0
Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…
Comment: Question on processing compound protein groups in limpa by brianpeterson1210 • 0
Thank you[,][1] Appreciated! [1]: http://paint3d.org
Comment: Subsetting DDS object for individual conditions over time by A ▴ 60
Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…
Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k
It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…
Comment: GSEA error by Adithi • 0
Thank you so much. That makes perfect sense to me. I will work on this.
Votes
Comment: Question about using LRT test for time course experiments with DESeq2
A: DESeq2 LRT test for multi-factor designs
Answer: RNA Seq using Lrt
Answer: DESeq2 LRT Reduced Formula
Answer: DESeq2: LRT or WALD guidance
Awards • All
Teacher to Michael Love 43k
Popular Question to A ▴ 60
Popular Question to Aichatou • 0
Popular Question to boczniak767 ▴ 740
Popular Question to shepherl 4.3k
Locations • All
Singapore, 21 minutes ago
The city by the bay, 3 hours ago
Australia, 3 hours ago
Melbourne, Australia, 4 hours ago
WEHI, Melbourne, Australia, 5 hours ago
Traffic: 1807 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6