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BiocCheck
•
reset
7
votes
2
replies
2.0k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 4.3 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.5k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 4.1 years ago by
Steve Lianoglou
★ 13k • written 4.1 years ago by
pouryany
• 0
0
votes
2
replies
1.3k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
4.6 years ago
ullrich
▴ 20
0
votes
2
replies
1.1k
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 4.7 years ago by
shepherl
4.2k • written 4.7 years ago by
wewolski
▴ 10
0
votes
2
replies
2.0k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
5.0 years ago
Hector
• 0
0
votes
1
reply
1.3k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.7k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
6.4 years ago
j.flesch
▴ 10
0
votes
12
replies
1.9k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
6.5 years ago
waterincan
• 0
0
votes
2
replies
1.4k
views
BiocCheck package size
BiocCheck
updated 6.7 years ago by
Hervé Pagès
16k • written 6.7 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
5.9k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 7.5 years ago by
shepherl
4.2k • written 7.5 years ago by
xyluo1991
• 0
2
votes
5
replies
2.5k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 7.5 years ago by
Marcel Ramos
700 • written 9.6 years ago by
richierocks
▴ 40
0
votes
1
reply
1.9k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
8.1 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 8.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.1 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.7k
views
BiocCheck path escape issue
bioccheck
bug
8.7 years ago • updated 8.6 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.2k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
ihnatova
• 0
3
votes
10
replies
3.6k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 3.2 years ago by
Marek Gierlinski
▴ 30 • written 9.2 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.7k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
9.7 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.4k
views
Man pages with runnable examples calculation
BiocCheck
updated 9.8 years ago by
Dan Tenenbaum
★ 8.2k • written 9.8 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
victor04052024
• 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
victor04052024
• 0
The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…
Comment: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt
by
horaortiz8
• 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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Gordon Smyth
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Vincent J. Carey, Jr.
6.7k
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Istvan Albert
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Dario Strbenac
★ 1.6k
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Nikos Ignatiadis
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