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BiocCheck
•
reset
7
votes
2
replies
2.1k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 4.4 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.5k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 4.2 years ago by
Steve Lianoglou
★ 13k • written 4.2 years ago by
pouryany
• 0
0
votes
2
replies
1.4k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
4.7 years ago
ullrich
▴ 20
0
votes
2
replies
1.1k
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 4.8 years ago by
shepherl
4.3k • written 4.8 years ago by
wewolski
▴ 10
0
votes
2
replies
2.1k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
5.2 years ago
Hector
• 0
0
votes
1
reply
1.3k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.7k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
6.5 years ago
j.flesch
▴ 10
0
votes
12
replies
2.0k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
6.7 years ago
waterincan
• 0
0
votes
2
replies
1.4k
views
BiocCheck package size
BiocCheck
updated 6.8 years ago by
Hervé Pagès
16k • written 6.8 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
6.2k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 7.6 years ago by
shepherl
4.3k • written 7.6 years ago by
xyluo1991
• 0
2
votes
5
replies
2.5k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 7.6 years ago by
Marcel Ramos
700 • written 9.7 years ago by
richierocks
▴ 40
0
votes
1
reply
1.9k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
8.3 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 8.3 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.3 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.8k
views
BiocCheck path escape issue
bioccheck
bug
8.8 years ago • updated 8.7 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.2k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
ihnatova
• 0
3
votes
10
replies
3.8k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 3.4 years ago by
Marek Gierlinski
▴ 30 • written 9.3 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.8k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
9.8 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.5k
views
Man pages with runnable examples calculation
BiocCheck
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
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