Showing : Correlation • reset
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 4 months ago by • 0 • written 17 months ago by • 0
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814
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Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq Correlation DESeq2
updated 20 months ago by 41k • written 20 months ago by • 0
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991
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WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 4 months ago by • 0 • written 2.4 years ago by • 0
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1
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1.0k
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spearman correlation
correlation sperarman
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by • 0
4
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1
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1.5k
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Best practice for correlating scRNA seq to bulkRNA seq data
seurat edgeR spearman correlation scRNAseq
updated 4.0 years ago by ★ 28k • written 4.0 years ago by ▴ 10
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2
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908
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Correlation plot how to improve?
plot correlation
4.5 years ago annkolman78 • 0
4
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Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2 correlation
5.5 years ago • updated 5.4 years ago Cornwell, Adam ▴ 110
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Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
5.5 years ago faramer86 • 0
0
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1.0k
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How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
5.8 years ago adriana.gallego.02 ▴ 20
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905
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Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 4 months ago by ★ 4.1k • written 6.0 years ago by • 0
0
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1.1k
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Differential Coexpression Analysis
differential analysis differential gene expression coexpression correlation
updated 6.1 years ago by ★ 3.0k • written 6.2 years ago by ▴ 20
2
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1
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841
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Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by ▴ 20
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2
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2.0k
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Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 7.1 years ago by ★ 5.2k • written 7.1 years ago by • 0
7
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3
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plotting correlation between samples
correlation
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 10
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9
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3.3k
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WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA similarity correlation bioconductor rnaseq
updated 7.2 years ago by ★ 3.0k • written 7.2 years ago by ▴ 40
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6
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1.5k
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expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.0 years ago by • 0 • written 7.3 years ago by ▴ 10
4
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4
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1.4k
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Correlation analysis taking into account multiple correlations
edger rna-seq correlation
updated 7.6 years ago by ▴ 270 • written 7.6 years ago by ▴ 10
15
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17
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23k
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WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 3.4 years ago by ▴ 730 • written 7.6 years ago by ▴ 40
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7
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How to create "trait data" file for WGCNA
wgcna coexpression correlation microarray
updated 8.2 years ago by ★ 3.0k • written 8.2 years ago by ▴ 20
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4
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Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2 correlation deseq linear
updated 8.7 years ago by ★ 7.9k • written 8.7 years ago by • 0
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Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.0 years ago by 21k • written 9.0 years ago by ★ 2.0k
21 results • Page 1 of 1
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Comment: putting my own expression data in deseq2 by ATpoint ★ 4.1k
> directly from GEOquery I can tell you that GEOquery retrieves array data not appropriate for DESeq2. For anything else make your questi…
Comment: Assist me in determining whether the analysis process using the limma package ha by SSSJec • 0
Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…
Comment: Why p value inconsistent when using different number of pathway score? by Gordon Smyth 50k
Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by Chris • 0
Thank you! The resource I use may mispresent the requirement input of fgsea.
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by alserg ▴ 260
fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
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Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
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