Bioconductor DNAMethylation

Showing : DNAMethylation • reset

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1.4k

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DNAMethylation QSEA MEDIP

2.8 years ago rtrivedi1 ▴ 10

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2.1k

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DNAMethylation ChAMP

updated 9 weeks ago by sup0903 • 0 • written 3.4 years ago by Hongbii • 0

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1.1k

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 12 months ago by Tim Peters ▴ 170 • written 12 months ago by Grace • 0

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932

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DNAMethylation missMethyl

updated 13 months ago by belinda.phipson ▴ 40 • written 13 months ago by Joana • 0

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443

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

11 weeks ago mikat • 0

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384

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DNAMethylation limmaGUI biostatistics limma

updated 10 weeks ago by Gordon Smyth 50k • written 11 weeks ago by Jitendra ▴ 10

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172

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DNAMethylation cfMeDIP-seq cfDNA qsea

updated 5 weeks ago by Simon Pearce • 0 • written 11 weeks ago by User3088 • 0

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253

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DNAMethylation limma methylationArrayAnalysis

9 days ago • updated 3 days ago hortense96 • 0

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308

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 15 days ago by Tim Peters ▴ 170 • written 23 days ago by s.malik • 0

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238

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

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384

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by rae.alshammari ▴ 10

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DNAMethylation DMRcate

22 days ago Macsue • 0

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486

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DNAMethylation missMethyl Pathways

12 months ago Grace • 0

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535

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DNAMethylation wateRmelon Computation minfi

20 months ago calen.p.ryan • 0

14 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0