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Showing :
DelayedArray
•
reset
1
vote
5
replies
1.7k
views
rowsum or similar for RleArray?
delayedarray
rowsum
written 6.7 years ago by
maltethodberg
▴ 180
1
vote
6
replies
791
views
DelayedArray::read_sparse_block
DelayedArray
updated 7 months ago by
Hervé Pagès
16k • written 8 months ago by
Koki
▴ 10
1
vote
6
replies
1.7k
views
Unusually long running times for getMeth function since latest release
bsseq
delayedarray
updated 6.8 years ago by
Peter Hickey
▴ 740 • written 6.9 years ago by
Alejandro Reyes
★ 1.9k
3
votes
8
replies
3.0k
views
Tutorial:
"developing" with HDF5Array
hdf5
DelayedArray
summarizedexperiment
Tutorial
7.2 years ago
Vincent J. Carey, Jr.
6.7k
2
votes
2
replies
1.2k
views
how to combine multiple DelayedArray to a high dimension array
delayedarray
updated 6.1 years ago by
Peter Hickey
▴ 740 • written 6.1 years ago by
Ou, Jianhong
★ 1.3k
0
votes
1
reply
1.1k
views
DelayedArray install fails to UNC path
delayedarray
bug
installation
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
simon.andrews
• 0
8
votes
8
replies
1.7k
views
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray
delayedmatrixstats
updated 5.5 years ago by
Peter Hickey
▴ 740 • written 5.5 years ago by
maltethodberg
▴ 180
4
votes
3
replies
1.1k
views
Best way of creating a large RleMatrix
DelayedArray
RleMatrix
updated 5.3 years ago by
Hervé Pagès
16k • written 5.5 years ago by
maltethodberg
▴ 180
2
votes
1
reply
1.2k
views
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
scater
BiocSingular
DelayedArray
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
kevin.rue
▴ 350
1
vote
3
replies
1.7k
views
Troubles with barcodeRanks()
DropletUtils
SingleCellExperiement
DelayedArray
simpleSingleCell
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
Steve Pederson
▴ 170
2
votes
8
replies
2.4k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray
warning
installation
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
inzirio
▴ 10
6
votes
5
replies
990
views
Building an HDF5Array/DelayedArray object incrementally
delayedarray
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
Stephen Piccolo
▴ 590
2
votes
3
replies
1.1k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 2.9 years ago by
Hervé Pagès
16k • written 2.9 years ago by
Koki
▴ 10
2
votes
5
replies
932
views
SparseArray unable to install on Bioc 3.18
DESeq2
SummarizedExperiment
SparseArray
Install
DelayedArray
updated 5 months ago by
Michael Love
41k • written 6 months ago by
eg226
• 0
4
votes
4
replies
1.4k
views
remove NA's from a DelayedArray
delayedarray
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
maltethodberg
▴ 180
2
votes
6
replies
1.5k
views
Plans for multicore block processing in DelayedArray?
delayedarray
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
maltethodberg
▴ 180
7
votes
4
replies
1.6k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.5 years ago by
Peter Hickey
▴ 740 • written 6.5 years ago by
davide risso
▴ 950
9
votes
8
replies
1.4k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 2.9 years ago by
Hervé Pagès
16k • written 2.9 years ago by
Pedro Baldoni
▴ 40
2
votes
4
replies
1.6k
views
SummarizedExperiment is now warning on attach about `read_block` namespace conflict
SummarizedExperiment
S4Arrays
DelayedArray
updated 11 months ago by
Hervé Pagès
16k • written 11 months ago by
Michael Steinbaugh
▴ 90
4
votes
1
reply
2.2k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
20 months ago
merv
▴ 120
1
vote
1
reply
1.0k
views
Could not find function ".read_block_OLD"
DelayedArray
S4Arrays
updated 11 months ago by
Hervé Pagès
16k • written 11 months ago by
xiuwen.zheng
• 0
0
votes
1
reply
1.9k
views
DESeq2 in R 4.2.2
DESeq2
SummarizedExperiment
DelayedArray
updated 15 months ago by
ATpoint
★ 4.1k • written 15 months ago by
Danielle
• 0
0
votes
8
replies
1.1k
views
Support of parquet files for on-disk Bioconductor objects
DelayedArray
TileDBArray
8 months ago • updated 7 months ago
sandmann.t
▴ 70
3
votes
5
replies
1.3k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 2.9 years ago by
Hervé Pagès
16k • written 2.9 years ago by
Pedro Baldoni
▴ 40
4
votes
3
replies
1.1k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
2.8 years ago
Koki
▴ 10
4
votes
13
replies
1.8k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 7 months ago by
Hervé Pagès
16k • written 2.6 years ago by
Koki
▴ 10
2
votes
3
replies
1.6k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
20 months ago • updated 19 months ago
merv
▴ 120
1
vote
2
replies
1.1k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
3.0 years ago
Koki
▴ 10
2
votes
6
replies
1.5k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 2.9 years ago by
Hervé Pagès
16k • written 3.0 years ago by
Koki
▴ 10
2
votes
4
replies
1.1k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
3.0 years ago
Koki
▴ 10
1
vote
1
reply
1.8k
views
Problem installing DelayedArray
DelayedArray
updated 3.2 years ago by
Hervé Pagès
16k • written 3.2 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
743
views
Error in 1D DelayedArray, when the spacings is larger than 1
DelayedArray
2.9 years ago
Koki
▴ 10
0
votes
1
reply
1.8k
views
Installation of package DelayedArray had non-zero exit status
delayedarray
5.8 years ago
cristoforo-grasso
• 0
0
votes
0
replies
1.0k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
20 months ago
merv
▴ 120
0
votes
1
reply
1.3k
views
Error with dmrfinder bsseq after combining Bsseq obj
bsseq r package
dmrfinder
delayedarray
combine
6.8 years ago
br
• 0
0
votes
1
reply
882
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
2.9 years ago
Koki
▴ 10
36 results • Page
1 of 1
Recent ...
Replies
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea()
by
James W. MacDonald
65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Votes
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
Answer: Help with running egsea()
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
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