Showing : EBImage • reset
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EBImage Rendering of a DelayedArray Object
DelayedArray EBImage cytomapper
updated 8 months ago by ★ 13k • written 8 months ago by ★ 1.6k
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1
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564
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Otsu threshold segmentation using EBImage
EBImage
updated 10 months ago by 68k • written 10 months ago by • 0
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2
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723
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EBImage - Selecting parameters for x-ray seed size analysis
EBImage
updated 16 months ago by ★ 13k • written 16 months ago by • 0
0
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0
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792
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Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny EBImage
2.8 years ago Wolfgang Huber ★ 13k
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0
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639
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Using EBImage for classifing image in 5 classes
Machine-Learning Image-Processing EBImage
updated 3.2 years ago by 4.1k • written 3.2 years ago by • 0
2
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6
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2.9k
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Cannot download “EBImage” library in R
R EBImage
written 4.5 years ago by • 0
1
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3
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1.6k
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Extracting coordinates of points in an image
EBImage image analysis
4.5 years ago eran.tauber • 0
3
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2
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1.5k
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EBImage: Annotate multiple images in a grid with display()?
EBImage display
updated 5.0 years ago by ▴ 750 • written 5.0 years ago by ▴ 180
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3
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1.2k
views
Installation path not writable
ebimage biocmanager
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
1
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2
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1.5k
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EBimage fftw issue
EBImage CentOS
updated 6.2 years ago by ★ 13k • written 6.2 years ago by ▴ 20
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1
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1.1k
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Best Practices for Speeding Up/Optimizing EBIMage
ebimage
6.3 years ago grockmore • 0
3
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19
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3.2k
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EBImage computeFeatures error
ebimage image processing computefeatures
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 20
0
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1
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1.0k
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What is the latest version of R that bioimagetools will run on?
r bioimagetools ebimage
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
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2
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1.3k
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How to filter overlaping EBImage objects?
ebimage
updated 6.6 years ago by ★ 13k • written 6.6 years ago by • 0
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4
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1.7k
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EBImage -- local machine VS cluster -- could not find function "slot"
ebimage
updated 6.7 years ago by ▴ 750 • written 6.8 years ago by ▴ 20
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1
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1.2k
views
Unable to display image in browser from script
software error R ebimage
updated 6.8 years ago by ▴ 750 • written 6.8 years ago by • 0
3
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6
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2.4k
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Relabelling objects - EBImage
ebimage image analysis image processing
6.9 years ago Mathieu Gendarme ▴ 20
3
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2
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1.3k
views
How to Remove EBImage objects that have holes?
ebimage
updated 7.0 years ago by ★ 13k • written 7.1 years ago by • 0
1
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2
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2.1k
views
EBImage cannot read .png images from Image.R
ebimage ggtree
updated 7.9 years ago by ▴ 750 • written 7.9 years ago by • 0
2
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3
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6.0k
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Error during EBImage installation
ebimage ggtree package installation
updated 7.9 years ago by ▴ 750 • written 7.9 years ago by ▴ 10
2
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2
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2.6k
views
get pixel coordinates interactively with EBimage
EBImage EBImage
updated 8.0 years ago by ▴ 750 • written 12.3 years ago by ▴ 60
2
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2
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1.4k
views
Deals with image value superior to 0,1 range
value ebimage writeImage error
8.0 years ago valerian.meline • 0
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3
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1.4k
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EBImage / problem in running the code via Rscript
ebimage image processing
updated 8.1 years ago by 25k • written 8.1 years ago by • 0
1
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1
reply
2.1k
views
compute Haralick features
haralick computeFeatures EBImage computeFeatures.haralick
updated 8.3 years ago by ▴ 550 • written 8.4 years ago by • 0
1
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5
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2.6k
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how install the package EBIamge on the software R 3.3.1?
R ebimage
8.5 years ago jeankarlosbarrosgalote ▴ 10
3
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4
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2.8k
views
Focal stacking of images in R/EBImage
ebimage
updated 8.5 years ago by ▴ 550 • written 8.6 years ago by ▴ 150
7
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6
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2.2k
views
Processing imaging data from high throughput compound screen with EBImage
ebimage
8.6 years ago phil.chapman ▴ 150
5
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3
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1.9k
views
Only 1s created by erode()
r ebimage morphology
updated 8.7 years ago by ▴ 750 • written 8.7 years ago by • 0
0
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6
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2.8k
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EBImage readImage hangs when reading tif file with multiple frames.
software error ebimage
updated 8.9 years ago by ▴ 750 • written 8.9 years ago by • 0
3
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1
reply
2.2k
views
Not able to display actual grayscale image using EBImage
ebimage image processing image display
updated 9.1 years ago by ▴ 750 • written 9.1 years ago by ▴ 10
1
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5
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1.6k
views
Opening command with NA and version 4.12.0
ebimage
9.3 years ago • updated 9.2 years ago jean.luc.lablee ▴ 10
3
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2
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1.9k
views
EBImage read png causes R to crash
ebimage bug
9.4 years ago Henning Redestig ▴ 20
2
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1
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1.4k
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Bug Report for R Package "EBImage": log(image, base=2) is same as log(*) (natural log) instead of log2 (base 2).
bug ebimage
updated 9.5 years ago by ▴ 750 • written 9.5 years ago by ▴ 20
2
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5
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2.7k
views
EBImage crashing in for-loop
ebimage crash image analysis
updated 9.8 years ago by ▴ 750 • written 9.8 years ago by • 0
0
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1
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1.6k
views
EBImage feature names
ebimage
updated 10.6 years ago by ▴ 750 • written 10.6 years ago by ▴ 60
2
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1
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1.9k
views
EBImage: Minimum and Maximum intensity on the edge of an object
EBImage EBImage
updated 12.0 years ago by ▴ 550 • written 12.1 years ago by ▴ 40
3
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3
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1.7k
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EBImage: filtering in the presence of NAs
PROcess EBImage PROcess EBImage
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 60
0
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1
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1.3k
views
Problems with medianFilter in EBImage 4.0.0
EBImage EBImage
updated 12.2 years ago by ▴ 750 • written 12.2 years ago by ▴ 10
0
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1
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1.4k
views
Memory issues with EBImage
EBImage EBImage
updated 12.5 years ago by ▴ 60 • written 12.5 years ago by ★ 13k
0
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2
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1.8k
views
EBImage package now easier to install (no system dependencies)
EBImage EBImage
updated 12.6 years ago by ▴ 70 • written 12.6 years ago by ▴ 750
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0
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1.0k
views
EBImage and redhat
EBImage EBImage
12.7 years ago Brian Pettegrew ▴ 10
0
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4
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2.6k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert OLIN EBImage BiocInstaller GUI convert OLIN EBImage BiocInstaller
12.7 years ago Dan Tenenbaum ★ 8.2k
0
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1
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1.5k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert EBImage BiocInstaller GUI convert EBImage BiocInstaller
updated 12.7 years ago by ★ 8.2k • written 12.7 years ago by ▴ 30
0
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3
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1.8k
views
computing segment areas on an image after thresholding
EBImage EBImage
updated 12.7 years ago by ▴ 30 • written 12.7 years ago by ★ 13k
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5
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1.9k
views
EBImage Sample code errors
GO EBImage GO EBImage
updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ▴ 70
0
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1
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2.4k
views
EBImage installation problem on Linux
EBImage BiocInstaller EBImage BiocInstaller
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ★ 13k
0
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1
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2.9k
views
Problems installing EBImage
EBImage EBImage
updated 12.9 years ago by ▴ 60 • written 12.9 years ago by ▴ 10
0
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21
replies
6.0k
views
unable to readImage using EBImage package
EBImage EBImage
updated 13.1 years ago by ▴ 90 • written 13.2 years ago by ★ 13k
0
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1
reply
1.4k
views
Problems installing EBImage package
convert EBImage convert EBImage
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ★ 13k
0
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1
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1.6k
views
EBImage in R-Cloud
EBImage EBImage
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ★ 13k
50 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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