Showing : EBImage • reset
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639
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Using EBI Image on Ranged Bar Chart
EBImage
written 6 months ago by • 0
2
votes
3
replies
919
views
EBImage Rendering of a DelayedArray Object
DelayedArray EBImage cytomapper
updated 6 months ago by 16k • written 16 months ago by ★ 1.6k
1
vote
1
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804
views
Otsu threshold segmentation using EBImage
EBImage
updated 17 months ago by 68k • written 18 months ago by • 0
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2
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939
views
EBImage - Selecting parameters for x-ray seed size analysis
EBImage
updated 24 months ago by ★ 13k • written 24 months ago by • 0
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0
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959
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Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny EBImage
3.4 years ago Wolfgang Huber ★ 13k
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Using EBImage for classifing image in 5 classes
Machine-Learning Image-Processing EBImage
updated 3.8 years ago by 4.2k • written 3.8 years ago by • 0
2
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6
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3.1k
views
Cannot download “EBImage” library in R
R EBImage
written 5.1 years ago by • 0
1
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3
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1.8k
views
Extracting coordinates of points in an image
EBImage image analysis
5.1 years ago eran.tauber • 0
3
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2
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1.7k
views
EBImage: Annotate multiple images in a grid with display()?
EBImage display
updated 5.7 years ago by ▴ 750 • written 5.7 years ago by ▴ 180
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3
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1.5k
views
Installation path not writable
ebimage biocmanager
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
1
vote
2
replies
1.7k
views
EBimage fftw issue
EBImage CentOS
updated 6.9 years ago by ★ 13k • written 6.9 years ago by ▴ 20
0
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1
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1.2k
views
Best Practices for Speeding Up/Optimizing EBIMage
ebimage
7.0 years ago • updated 6.9 years ago grockmore • 0
3
votes
19
replies
3.6k
views
EBImage computeFeatures error
ebimage image processing computefeatures
updated 7.1 years ago by ★ 6.6k • written 7.1 years ago by ▴ 20
0
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1
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1.2k
views
What is the latest version of R that bioimagetools will run on?
r bioimagetools ebimage
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
1
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2
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1.4k
views
How to filter overlaping EBImage objects?
ebimage
updated 7.2 years ago by ★ 13k • written 7.3 years ago by • 0
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4
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1.9k
views
EBImage -- local machine VS cluster -- could not find function "slot"
ebimage
updated 7.4 years ago by ▴ 750 • written 7.4 years ago by ▴ 20
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1
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1.4k
views
Unable to display image in browser from script
software error R ebimage
updated 7.4 years ago by ▴ 750 • written 7.5 years ago by • 0
3
votes
6
replies
2.7k
views
Relabelling objects - EBImage
ebimage image analysis image processing
7.6 years ago • updated 7.5 years ago Mathieu Gendarme ▴ 20
3
votes
2
replies
1.4k
views
How to Remove EBImage objects that have holes?
ebimage
updated 7.7 years ago by ★ 13k • written 7.7 years ago by • 0
1
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2
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2.3k
views
EBImage cannot read .png images from Image.R
ebimage ggtree
updated 8.5 years ago by ▴ 750 • written 8.5 years ago by • 0
2
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3
replies
6.2k
views
Error during EBImage installation
ebimage ggtree package installation
updated 8.5 years ago by ▴ 750 • written 8.5 years ago by ▴ 10
2
votes
2
replies
2.8k
views
get pixel coordinates interactively with EBimage
EBImage EBImage
updated 8.6 years ago by ▴ 750 • written 12.9 years ago by ▴ 60
2
votes
2
replies
1.5k
views
Deals with image value superior to 0,1 range
value ebimage writeImage error
8.6 years ago valerian.meline • 0
0
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3
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1.5k
views
EBImage / problem in running the code via Rscript
ebimage image processing
updated 8.7 years ago by 25k • written 8.7 years ago by • 0
1
vote
1
reply
2.3k
views
compute Haralick features
haralick computeFeatures EBImage computeFeatures.haralick
updated 9.0 years ago by ▴ 550 • written 9.0 years ago by • 0
1
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5
replies
2.9k
views
how install the package EBIamge on the software R 3.3.1?
R ebimage
9.1 years ago jeankarlosbarrosgalote ▴ 10
3
votes
4
replies
3.0k
views
Focal stacking of images in R/EBImage
ebimage
updated 9.2 years ago by ▴ 550 • written 9.2 years ago by ▴ 150
7
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6
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2.4k
views
Processing imaging data from high throughput compound screen with EBImage
ebimage
9.2 years ago phil.chapman ▴ 150
5
votes
3
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2.1k
views
Only 1s created by erode()
r ebimage morphology
updated 9.3 years ago by ▴ 750 • written 9.3 years ago by • 0
0
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6
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3.0k
views
EBImage readImage hangs when reading tif file with multiple frames.
software error ebimage
updated 9.6 years ago by ▴ 750 • written 9.6 years ago by • 0
3
votes
1
reply
2.4k
views
Not able to display actual grayscale image using EBImage
ebimage image processing image display
updated 9.7 years ago by ▴ 750 • written 9.7 years ago by ▴ 10
1
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5
replies
1.8k
views
Opening command with NA and version 4.12.0
ebimage
9.9 years ago jean.luc.lablee ▴ 10
3
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2
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2.1k
views
EBImage read png causes R to crash
ebimage bug
10.1 years ago Henning Redestig ▴ 20
2
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1
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1.6k
views
Bug Report for R Package "EBImage": log(image, base=2) is same as log(*) (natural log) instead of log2 (base 2).
bug ebimage
updated 10.1 years ago by ▴ 750 • written 10.1 years ago by ▴ 20
2
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5
replies
2.9k
views
EBImage crashing in for-loop
ebimage crash image analysis
updated 10.4 years ago by ▴ 750 • written 10.5 years ago by • 0
0
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1
reply
1.8k
views
EBImage feature names
ebimage
updated 11.2 years ago by ▴ 750 • written 11.2 years ago by ▴ 60
2
votes
1
reply
2.1k
views
EBImage: Minimum and Maximum intensity on the edge of an object
EBImage EBImage
updated 12.7 years ago by ▴ 550 • written 12.7 years ago by ▴ 40
3
votes
3
replies
1.9k
views
EBImage: filtering in the presence of NAs
PROcess EBImage PROcess EBImage
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 60
0
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1
reply
1.4k
views
Problems with medianFilter in EBImage 4.0.0
EBImage EBImage
updated 12.8 years ago by ▴ 750 • written 12.8 years ago by ▴ 10
0
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1
reply
1.5k
views
Memory issues with EBImage
EBImage EBImage
updated 13.1 years ago by ▴ 60 • written 13.1 years ago by ★ 13k
0
votes
2
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1.9k
views
EBImage package now easier to install (no system dependencies)
EBImage EBImage
updated 13.2 years ago by ▴ 70 • written 13.2 years ago by ▴ 750
0
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0
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1.2k
views
EBImage and redhat
EBImage EBImage
13.3 years ago Brian Pettegrew ▴ 10
0
votes
4
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2.9k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert OLIN EBImage BiocInstaller GUI convert OLIN EBImage BiocInstaller
13.3 years ago Dan Tenenbaum ★ 8.2k
0
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1
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1.6k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI convert EBImage BiocInstaller GUI convert EBImage BiocInstaller
updated 13.3 years ago by ★ 8.2k • written 13.3 years ago by ▴ 30
0
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3
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2.0k
views
computing segment areas on an image after thresholding
EBImage EBImage
updated 13.4 years ago by ▴ 30 • written 13.4 years ago by ★ 13k
0
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5
replies
2.1k
views
EBImage Sample code errors
GO EBImage GO EBImage
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by ▴ 70
0
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1
reply
2.5k
views
EBImage installation problem on Linux
EBImage BiocInstaller EBImage BiocInstaller
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ★ 13k
0
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1
reply
3.1k
views
Problems installing EBImage
EBImage EBImage
updated 13.5 years ago by ▴ 60 • written 13.5 years ago by ▴ 10
0
votes
21
replies
6.5k
views
unable to readImage using EBImage package
EBImage EBImage
updated 13.7 years ago by ▴ 90 • written 13.8 years ago by ★ 13k
0
votes
1
reply
1.5k
views
Problems installing EBImage package
convert EBImage convert EBImage
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ★ 13k
94 results • Page 1 of 2
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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