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ExperimentData
•
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0
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11
replies
2.4k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
19 months ago • updated 12 months ago
shepherl
4.2k
1
vote
8
replies
2.0k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.6 years ago by
shepherl
4.2k
1
vote
1
reply
1.2k
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
Mohamed
▴ 30
0
votes
5
replies
2.0k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
4.0 years ago • updated 3.5 years ago
shepherl
4.2k
2
votes
2
replies
2.0k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
4.9 years ago • updated 4.4 years ago
shepherl
4.2k
1
vote
2
replies
1.8k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
5.0 years ago
shepherl
4.2k
0
votes
0
replies
1.3k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.6 years ago
shepherl
4.2k
0
votes
1
reply
1.3k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.8 years ago
shepherl
4.2k
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.9 years ago
shepherl
4.2k
0
votes
2
replies
2.5k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
6.0 years ago • updated 5.9 years ago
shepherl
4.2k
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
6.1 years ago • updated 6.0 years ago
shepherl
4.2k
0
votes
1
reply
1.4k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
6.2 years ago • updated 6.1 years ago
shepherl
4.2k
0
votes
3
replies
1.6k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
6.4 years ago
shepherl
4.2k
0
votes
1
reply
1.2k
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
6.4 years ago
shepherl
4.2k
0
votes
1
reply
1.6k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
6.7 years ago
shepherl
4.2k
0
votes
0
replies
1.4k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
7.5 years ago
shepherl
4.2k
0
votes
0
replies
1.4k
views
How to load additional data from fcs files
fcs
concentration
experimentdata
8.5 years ago
jurg.spaak
• 0
0
votes
1
reply
2.1k
views
Extract the gate in the data file (fcs file) from MoFlo Astrios
gate
cytometry
experimentdata
stategy
MoFlo Astrios
8.7 years ago
cr
• 0
1
vote
2
replies
1.5k
views
Submitting an experimental data package
submit package
experimentdata
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
mark.dunning
▴ 20
1
vote
3
replies
1.9k
views
How to update the data in an experimental data package
experimentdata
update
updated 11.1 years ago by
Laurent Gatto
1.6k • written 11.1 years ago by
paul.theodor.pyl
▴ 10
0
votes
2
replies
3.6k
views
Biobase - Error: ExpressionSet
Microarray
Annotation
GO
ExperimentData
Biobase
Microarray
Annotation
GO
ExperimentData
updated 12.0 years ago by
Laurent Gatto
1.6k • written 12.0 years ago by
Lisa Cohen
▴ 50
0
votes
4
replies
10k
views
Error while building ExpressionSet from scratch....
ExperimentData
LMGene
ExperimentData
LMGene
updated 13.9 years ago by
Martin Morgan
25k • written 13.9 years ago by
Bas Jansen
▴ 150
0
votes
1
reply
1.7k
views
justRMA {affy} error
Annotation
ExperimentData
cdf
Annotation
ExperimentData
cdf
updated 14.1 years ago by
Martin Morgan
25k • written 14.1 years ago by
Julio Alejandro Di Rienzo
▴ 10
0
votes
2
replies
2.4k
views
RMA implemented in oligo package vs affy package
ExperimentData
cdf
affy
PROcess
oligo
ExperimentData
cdf
affy
PROcess
oligo
16.6 years ago
heyi xiao
▴ 360
0
votes
0
replies
1.6k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
beadarray
Annotation
ExperimentData
beadarray
16.6 years ago
Anne-Kristin Stavrum
▴ 10
0
votes
0
replies
1.6k
views
Beadarray error: comparison of types not implemented
Annotation
ExperimentData
Cancer
Biobase
beadarray
Annotation
ExperimentData
Cancer
16.6 years ago
Martin Morgan
25k
0
votes
3
replies
2.1k
views
ExpressionSet or MAList
Annotation
ExperimentData
Cancer
Annotation
ExperimentData
Cancer
updated 17.5 years ago by
Gordon Smyth
53k • written 17.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.9k
views
ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :
Annotation
ExperimentData
cdf
affy
Annotation
ExperimentData
cdf
affy
updated 17.6 years ago by
James W. MacDonald
68k • written 17.6 years ago by
Langdon W B
▴ 20
0
votes
3
replies
2.6k
views
ReadAffy Error
Annotation
ExperimentData
cdf
affy
affyio
Annotation
ExperimentData
cdf
affy
affyio
updated 18.1 years ago by
Sylvia.Merk@ukmuenster.de
▴ 60 • written 18.1 years ago by
Markus Schmidberger
▴ 380
0
votes
6
replies
4.0k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 18.2 years ago by
Weiyin Zhou
▴ 220 • written 18.2 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
2.2k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
18.2 years ago
Min Wook Kim
▴ 20
31 results • Page
1 of 1
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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