Bioconductor Filter

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loop filter

written 6.5 years ago by kritikamish99 ▴ 10

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3.5k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by svlachavas ▴ 830

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3.2k

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DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

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deseq filter reads

9.3 years ago ccheung • 0

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probe filter subset gene symbol affy

9.2 years ago alakatos ▴ 130

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1.8k

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deseq2 filter genefilter

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by Björn • 0

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RNA WGCNA filter

4.8 years ago modarzi ▴ 10

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variantannotation vcf fixed filter

9.3 years ago Anna N. • 0

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1.3k

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flowcore gate subsetting filter

updated 8.6 years ago by Jiang, Mike ★ 1.3k • written 8.6 years ago by peterfoster ▴ 20

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limma filter genelist differential gene expression

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by bi_Scholar • 0

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rtracklayer gff filter

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by alslonik • 0

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1.0k

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missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

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901

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R filter limma Normalization Microarray

12 months ago Abdul ▴ 20

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773

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filter deseq2

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by charles.foster ▴ 160

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689

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flowCore openCyto Summary Result Filter

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.1 years ago by noviello • 0

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682

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filter deseq2

updated 12 months ago by Michael Love 41k • written 12 months ago by PD • 0

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550

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filter gate_quad_tmix gt_gating

2.1 years ago • updated 2.0 years ago Pierre • 0

17 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10

Thanks for your thoughtful and detailed comment, Gordon

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …

Answer: How to save the DEXSeq results by Michael Love 41k

If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…

Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k

Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …

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Answer: Method to find pathways different between 2 groups

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

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