Showing : GWAS • reset
0
votes
4
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1.5k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.9 years ago • updated 2.8 years ago Weiqiong • 0
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1.2k
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
3.6 years ago Sarah • 0
0
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0
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1.2k
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
3.6 years ago helene.ruffieux • 0
0
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0
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1.1k
views
Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
3.9 years ago helene.ruffieux • 0
0
votes
1
reply
1.1k
views
gwas power calculation for quantitative traits
power GWAS
written 4.4 years ago by • 0
1
vote
2
replies
5.7k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 5.0 years ago by • 0 • written 6.1 years ago by • 0
0
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0
replies
1.5k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.8 years ago jiyeon.choi2 • 0
0
votes
3
replies
1.8k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.5 years ago by ▴ 70 • written 6.5 years ago by • 0
0
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0
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1.1k
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.9 years ago pwjeffries • 0
0
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1
reply
1.4k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
7.0 years ago naglemi ▴ 10
1
vote
1
reply
1.5k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 7.2 years ago by ▴ 70 • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.3 years ago by ▴ 30 • written 7.3 years ago by ▴ 10
0
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0
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1.2k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.4 years ago zhu • 0
0
votes
3
replies
1.8k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.5 years ago by ▴ 70 • written 7.5 years ago by ▴ 10
3
votes
4
replies
2.1k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.5 years ago by ▴ 70 • written 7.5 years ago by ▴ 10
0
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1
reply
1.4k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.6 years ago GENOMIC_region • 0
0
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0
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1.4k
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
8.5 years ago IV ▴ 30
2
votes
0
replies
1.8k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
9.6 years ago enridomenici ▴ 10
0
votes
0
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1.5k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
10.5 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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