Showing : GWAS • reset
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4
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1.4k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.7 years ago Weiqiong • 0
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1.2k
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
3.5 years ago Sarah • 0
0
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0
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1.2k
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
3.5 years ago helene.ruffieux • 0
0
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0
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1.0k
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
3.8 years ago helene.ruffieux • 0
0
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1
reply
1.1k
views
gwas power calculation for quantitative traits
power GWAS
written 4.3 years ago by • 0
1
vote
2
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5.6k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.9 years ago by • 0 • written 6.0 years ago by • 0
0
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0
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1.4k
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Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.7 years ago jiyeon.choi2 • 0
0
votes
3
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1.7k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by • 0
0
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0
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1.1k
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.8 years ago pwjeffries • 0
0
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1
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1.4k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.8 years ago naglemi ▴ 10
1
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1
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1.4k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 7.1 years ago by ▴ 70 • written 7.1 years ago by ▴ 10
0
votes
1
reply
1.5k
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by ▴ 10
0
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0
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1.2k
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.3 years ago zhu • 0
0
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3
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1.7k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.4 years ago by ▴ 70 • written 7.4 years ago by ▴ 10
3
votes
4
replies
2.0k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.4 years ago by ▴ 70 • written 7.4 years ago by ▴ 10
0
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1
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1.4k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.4 years ago GENOMIC_region • 0
0
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0
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1.3k
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Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
8.4 years ago IV ▴ 30
2
votes
0
replies
1.8k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
9.5 years ago enridomenici ▴ 10
0
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0
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1.5k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
10.4 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to shepherl 4.2k
Popular Question to James W. MacDonald 68k
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Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
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