Showing : GWAS • reset
0
votes
4
replies
820
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
15 months ago Weiqiong • 0
0
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0
replies
779
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.0 years ago Sarah • 0
0
votes
0
replies
784
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
2.0 years ago helene.ruffieux • 0
0
votes
0
replies
735
views
Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
2.3 years ago helene.ruffieux • 0
0
votes
1
reply
706
views
gwas power calculation for quantitative traits
power GWAS
written 2.8 years ago by • 0
1
vote
2
replies
4.2k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.4 years ago by • 0 • written 4.5 years ago by • 0
0
votes
0
replies
952
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
4.2 years ago jiyeon.choi2 • 0
0
votes
3
replies
1.2k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 4.9 years ago by ▴ 70 • written 4.9 years ago by • 0
0
votes
0
replies
759
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
5.4 years ago pwjeffries • 0
0
votes
1
reply
1.0k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.4 years ago naglemi ▴ 10
1
vote
1
reply
955
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 5.6 years ago by ▴ 70 • written 5.6 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 5.7 years ago by ▴ 30 • written 5.7 years ago by ▴ 10
0
votes
0
replies
900
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
5.8 years ago zhu • 0
0
votes
3
replies
1.2k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 5.9 years ago by ▴ 70 • written 5.9 years ago by ▴ 10
3
votes
4
replies
1.5k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 5.9 years ago by ▴ 70 • written 5.9 years ago by ▴ 10
0
votes
1
reply
950
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.0 years ago GENOMIC_region • 0
0
votes
0
replies
1.1k
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
7.0 years ago IV ▴ 30
2
votes
0
replies
1.4k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.0 years ago enridomenici ▴ 10
0
votes
0
replies
1.2k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
8.9 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
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