Showing : GWAS • reset
0
votes
4
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1.1k
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
21 months ago Weiqiong • 0
0
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0
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912
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.5 years ago Sarah • 0
0
votes
0
replies
930
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
2.5 years ago helene.ruffieux • 0
0
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0
replies
861
views
Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
2.8 years ago helene.ruffieux • 0
0
votes
1
reply
837
views
gwas power calculation for quantitative traits
power GWAS
written 3.3 years ago by • 0
1
vote
2
replies
4.8k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.9 years ago by • 0 • written 5.1 years ago by • 0
0
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0
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1.1k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
4.7 years ago jiyeon.choi2 • 0
0
votes
3
replies
1.4k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.4 years ago by ▴ 70 • written 5.4 years ago by • 0
0
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0
replies
880
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
5.9 years ago pwjeffries • 0
0
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1
reply
1.1k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.9 years ago naglemi ▴ 10
1
vote
1
reply
1.1k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.1 years ago by ▴ 70 • written 6.1 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.3 years ago by ▴ 30 • written 6.3 years ago by ▴ 10
0
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0
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1.0k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.3 years ago zhu • 0
0
votes
3
replies
1.4k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 10
3
votes
4
replies
1.7k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 10
0
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1
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1.1k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.5 years ago GENOMIC_region • 0
0
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0
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1.2k
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
7.5 years ago IV ▴ 30
2
votes
0
replies
1.6k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.5 years ago enridomenici ▴ 10
0
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0
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1.3k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
9.4 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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