Showing : GWAS • reset
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4
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1.2k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.1 years ago Weiqiong • 0
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0
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991
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.9 years ago Sarah • 0
0
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0
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1.0k
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
2.9 years ago helene.ruffieux • 0
0
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0
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926
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
3.1 years ago helene.ruffieux • 0
0
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1
reply
917
views
gwas power calculation for quantitative traits
power GWAS
written 3.7 years ago by • 0
1
vote
2
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5.1k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.2 years ago by • 0 • written 5.4 years ago by • 0
0
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0
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1.2k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.0 years ago jiyeon.choi2 • 0
0
votes
3
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1.5k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.7 years ago by ▴ 70 • written 5.8 years ago by • 0
0
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0
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963
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.2 years ago pwjeffries • 0
0
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1
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1.2k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.2 years ago naglemi ▴ 10
1
vote
1
reply
1.2k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 10
0
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1
reply
1.3k
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.6 years ago by ▴ 30 • written 6.6 years ago by ▴ 10
0
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0
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1.1k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.7 years ago zhu • 0
0
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3
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1.5k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.7 years ago by ▴ 70 • written 6.8 years ago by ▴ 10
3
votes
4
replies
1.8k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.8 years ago by ▴ 70 • written 6.8 years ago by ▴ 10
0
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1
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1.2k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.8 years ago GENOMIC_region • 0
0
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0
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1.3k
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Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
7.8 years ago IV ▴ 30
2
votes
0
replies
1.6k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.9 years ago enridomenici ▴ 10
0
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0
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1.3k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
9.7 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: Differing results with DESeq2 by JKim • 0
I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for gene expressio…
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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