Showing : GWAS • reset
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4
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1.4k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.6 years ago Weiqiong • 0
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1.1k
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
3.3 years ago Sarah • 0
0
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0
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1.1k
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
3.3 years ago helene.ruffieux • 0
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0
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1.0k
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
3.6 years ago helene.ruffieux • 0
0
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1
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1.1k
views
gwas power calculation for quantitative traits
power GWAS
written 4.1 years ago by • 0
1
vote
2
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5.4k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.7 years ago by • 0 • written 5.9 years ago by • 0
0
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1.3k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.5 years ago jiyeon.choi2 • 0
0
votes
3
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1.7k
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GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.2 years ago by ▴ 70 • written 6.2 years ago by • 0
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.7 years ago pwjeffries • 0
0
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1
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1.3k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.7 years ago naglemi ▴ 10
1
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1
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1.4k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.9 years ago by ▴ 70 • written 6.9 years ago by ▴ 10
0
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1
reply
1.4k
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.1 years ago by ▴ 30 • written 7.1 years ago by ▴ 10
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0
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1.2k
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.1 years ago zhu • 0
0
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3
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1.7k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.2 years ago by ▴ 70 • written 7.2 years ago by ▴ 10
3
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4
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2.0k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.2 years ago by ▴ 70 • written 7.2 years ago by ▴ 10
0
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1
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1.3k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.3 years ago GENOMIC_region • 0
0
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0
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1.3k
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Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
8.3 years ago IV ▴ 30
2
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0
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1.7k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
9.3 years ago enridomenici ▴ 10
0
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0
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1.4k
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News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
10.2 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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