Showing : GWAS • reset
0
votes
4
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1.0k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
20 months ago Weiqiong • 0
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0
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889
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.4 years ago Sarah • 0
0
votes
0
replies
903
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
2.4 years ago helene.ruffieux • 0
0
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0
replies
840
views
Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
2.7 years ago helene.ruffieux • 0
0
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1
reply
817
views
gwas power calculation for quantitative traits
power GWAS
written 3.2 years ago by • 0
1
vote
2
replies
4.7k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.8 years ago by • 0 • written 4.9 years ago by • 0
0
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0
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1.1k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
4.6 years ago jiyeon.choi2 • 0
0
votes
3
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1.4k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.3 years ago by ▴ 70 • written 5.3 years ago by • 0
0
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0
replies
862
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
5.7 years ago pwjeffries • 0
0
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1
reply
1.1k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.8 years ago naglemi ▴ 10
1
vote
1
reply
1.1k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.0 years ago by ▴ 70 • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.1 years ago by ▴ 30 • written 6.1 years ago by ▴ 10
0
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0
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1000
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.2 years ago zhu • 0
0
votes
3
replies
1.4k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by ▴ 10
3
votes
4
replies
1.7k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by ▴ 10
0
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1
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1.1k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.4 years ago GENOMIC_region • 0
0
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0
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1.2k
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
7.3 years ago IV ▴ 30
2
votes
0
replies
1.5k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.4 years ago enridomenici ▴ 10
0
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0
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1.3k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
9.3 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2 by icecreamlover • 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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Popular Question to James W. MacDonald 67k
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