Showing : GWAS • reset
0
votes
4
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1.4k
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.6 years ago Weiqiong • 0
0
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0
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1.1k
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
3.4 years ago Sarah • 0
0
votes
0
replies
1.2k
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
3.4 years ago helene.ruffieux • 0
0
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0
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1.0k
views
Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
3.6 years ago helene.ruffieux • 0
0
votes
1
reply
1.1k
views
gwas power calculation for quantitative traits
power GWAS
written 4.2 years ago by • 0
1
vote
2
replies
5.5k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.7 years ago by • 0 • written 5.9 years ago by • 0
0
votes
0
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1.4k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.6 years ago jiyeon.choi2 • 0
0
votes
3
replies
1.7k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by • 0
0
votes
0
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1.1k
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.7 years ago pwjeffries • 0
0
votes
1
reply
1.3k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.7 years ago naglemi ▴ 10
1
vote
1
reply
1.4k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 7.0 years ago by ▴ 70 • written 7.0 years ago by ▴ 10
0
votes
1
reply
1.4k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.1 years ago by ▴ 30 • written 7.1 years ago by ▴ 10
0
votes
0
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1.2k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.2 years ago zhu • 0
0
votes
3
replies
1.7k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 10
3
votes
4
replies
2.0k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 10
0
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1
reply
1.3k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.3 years ago GENOMIC_region • 0
0
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0
replies
1.3k
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
8.3 years ago IV ▴ 30
2
votes
0
replies
1.8k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
9.4 years ago enridomenici ▴ 10
0
votes
0
replies
1.4k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
10.2 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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