Showing : LIMMA • reset
1
vote
2
replies
828
views
Subsetting RNAseq data | voomaByGroup()
limma
19 months ago Anna • 0
1
vote
2
replies
1.1k
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
20 months ago Dylan.Sheerin • 0
2
votes
2
replies
1.3k
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
20 months ago • updated 19 months ago user_bioinfo • 0
3
votes
10
replies
2.1k
views
Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 20 months ago by 68k • written 20 months ago by • 0
3
votes
2
replies
1.1k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 19 months ago by 53k • written 20 months ago by • 0
0
votes
1
reply
753
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 20 months ago by 53k • written 20 months ago by • 0
3
votes
4
replies
1.1k
views
Help with error using camera() in limma
CAMERA limma
20 months ago Chris ▴ 20
0
votes
3
replies
957
views
Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 20 months ago by 68k • written 20 months ago by • 0
0
votes
2
replies
820
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 20 months ago by • 0
0
votes
2
replies
1.3k
views
RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
20 months ago catv • 0
15
votes
17
replies
3.7k
views
Why p value inconsistent when using different number of pathway score?
limma
20 months ago Chris ▴ 20
5
votes
3
replies
1.6k
views
Log-cpm values from limma
limma edgeR RNASeq
updated 20 months ago by 53k • written 20 months ago by • 0
0
votes
7
replies
2.5k
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
20 months ago hortense96 • 0
1
vote
3
replies
988
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 20 months ago by 53k • written 21 months ago by • 0
5
votes
9
replies
2.3k
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
21 months ago • updated 20 months ago Chris ▴ 20
2
votes
6
replies
4.4k
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
21 months ago Chris ▴ 20
0
votes
1
reply
617
views
Limma design matrix only showing 3/4 treatments?
limma designmatrix
updated 21 months ago by 53k • written 21 months ago by • 0
0
votes
4
replies
934
views
Help with design.matrix
limma
21 months ago andrea.rodriguez-martinez13 • 0
1
vote
4
replies
1.1k
views
Using a change in a continuous explanatory variable to test changes in gene expression with limma
limma
updated 21 months ago by 53k • written 21 months ago by • 0
0
votes
2
replies
913
views
voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom Limma WGCNA
21 months ago Gimena • 0
15
votes
23
replies
5.4k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
21 months ago • updated 20 months ago Chris ▴ 20
2
votes
8
replies
1.5k
views
Microarray Limma Model fitting and DEG
limma DGEanalysis
updated 21 months ago by 53k • written 21 months ago by • 0
5
votes
25
replies
3.3k
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 21 months ago by 53k • written 21 months ago by ▴ 10
7
votes
6
replies
1.3k
views
Batch Effect Correction, Gene Filtering
DGE limma
updated 21 months ago by 53k • written 21 months ago by • 0
0
votes
1
reply
1.1k
views
Using splicing junction counts with edgeR/limma-voom
splicing limma edgeR
updated 21 months ago by 53k • written 21 months ago by • 0
0
votes
4
replies
1.1k
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo limma hugene11stprobeset.db AffymetrixChip
21 months ago Efra • 0
5
votes
7
replies
1.6k
views
DEG Filtering
MicroarrayData limma Genefiltering
updated 21 months ago by 53k • written 21 months ago by • 0
2
votes
2
replies
887
views
Question about extracting co-efficients for pairwise comparisons in edgeR
limma fit design RNASeq edgeR
21 months ago Sabiha ▴ 20
0
votes
2
replies
3.3k
views
RNA sequencing raw counts gene filtering
DESeq2 limma RNAseq
21 months ago kcarey • 0
1
vote
3
replies
1.1k
views
Cross-species analysis - how to compute the mid parent value?
DESeq2 limma edgeR DifferentialExpression
written 23 months ago by • 0
2
votes
6
replies
1.6k
views
limma: vooma mean-variance trend and data filtration
MicroarrayData limma
22 months ago • updated 21 months ago Lily Cheang ▴ 10
3
votes
8
replies
1.4k
views
Constrast for Time Course Experiments using Limma
limma
22 months ago dl17032000 • 0
8
votes
6
replies
1.3k
views
DGE analysis with LIMMA
limma
updated 22 months ago by 53k • written 22 months ago by • 0
0
votes
0
replies
600
views
Can I combine collinear variables into a single value
BatchEffect limma
22 months ago Harrsha • 0
0
votes
3
replies
1.2k
views
Differential enrichment analysis
limma Differentialenrichmentanalysis DEP
updated 22 months ago by 53k • written 22 months ago by • 0
0
votes
4
replies
1.1k
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
22 months ago mperalc • 0
3
votes
5
replies
1.8k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 22 months ago by 43k • written 22 months ago by ▴ 10
2
votes
1
reply
769
views
Limma Question
DESeq2 BatchEffect limma RNASeq
updated 22 months ago by 43k • written 22 months ago by ▴ 10
1
vote
2
replies
971
views
Bioconductor unreachable?
limma
22 months ago edoardo • 0
0
votes
9
replies
2.3k
views
limma fo continous variables
limma DEGseq
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
2
replies
863
views
limma model matrix questions
limmaGUI limma pairedsamples
22 months ago whyw6948 • 0
0
votes
2
replies
1.2k
views
Limma with replicates at different time points
RNAs limma Differen
22 months ago alessandro • 0
2
votes
1
reply
821
views
Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 22 months ago by ★ 5.0k • written 22 months ago by • 0
1
vote
3
replies
1.6k
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 23 months ago by 53k • written 23 months ago by ▴ 10
0
votes
4
replies
1.1k
views
limma with interaction term
R biostatistics limma Epigenetics
23 months ago • updated 22 months ago Jitendra ▴ 10
3
votes
2
replies
1.1k
views
Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
23 months ago Shaimaa Gamal • 0
2
votes
3
replies
968
views
Longitudinal analysis in Limma: Block=ID as random effect
limma
23 months ago COPD_Project • 0
2
votes
2
replies
805
views
Limma design for 3 replicated time courses comparing treatment vs placebo
design limma
23 months ago SamGG ▴ 360
1
vote
4
replies
1.4k
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 23 months ago by 53k • written 23 months ago by ▴ 10
4
votes
3
replies
1.2k
views
voom with quality weights after RUV correction
RUVSeq limma DifferentialExpression
updated 23 months ago by 53k • written 23 months ago by • 0
4,228 results • Page 3 of 85
Recent ...
Replies
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Guitar R package requires update due to dependency GenomicFeatures by Frank • 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Votes
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
Answer: Limma-voom sample weights and impact on DEG numbers
Awards • All
Teacher to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Locations • All
The city by the bay, 52 minutes ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Türkiye, 4 hours ago
Seattle, WA, United States, 6 hours ago
Traffic: 2645 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6