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1.4k

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DESeq2 log2 normalized counts

updated 15 months ago by James W. MacDonald 65k • written 15 months ago by Laia ▴ 10

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1.9k

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Log2 edgeR RNA limma Normalization

17 months ago Sara • 0

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2.6k

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log2 DESeq2

21 months ago User000 • 0

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893

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edgeR RNA-Seq log2 foldchange q_value

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by johndavidgriner74 • 0

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2.0k

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log2 RMA Affymetrix affy Normalization

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by Lara • 0

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1.4k

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normalized counts log2

5.6 years ago agdif ▴ 10

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932

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mfuzz fold change log2 STANDARDISATION

5.9 years ago prakashpandey1111 • 0

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789

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NMF log2 classification bioconductor

5.9 years ago Seymoo • 0

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5.7k

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limma pvalue log2fc log2

updated 17 months ago by James W. MacDonald 65k • written 8.1 years ago by serpalma.v ▴ 60

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3.0k

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limma export log2 data agilent

updated 9.6 years ago by James W. MacDonald 65k • written 9.6 years ago by Jahn Davik ▴ 110

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Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

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Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

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