Showing : Log2 • reset
0
votes
8
replies
2.7k
views
DESeq2 different log2FC and p-value filtering parameters results comparison
log2 DESeq2
22 months ago User000 • 0
6
votes
8
replies
5.8k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma pvalue log2fc log2
updated 18 months ago by 66k • written 8.1 years ago by ▴ 60
3
votes
6
replies
2.0k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
18 months ago Sara • 0
2
votes
4
replies
3.1k
views
exporting limma log2 data
limma export log2 data agilent
updated 9.6 years ago by 66k • written 9.6 years ago by ▴ 110
3
votes
1
reply
1.5k
views
log2 of normalized counts for further analyzes
DESeq2 log2 normalized counts
updated 15 months ago by 66k • written 15 months ago by ▴ 10
0
votes
1
reply
2.0k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
0
votes
1
reply
915
views
First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 2.4 years ago by 50k • written 2.4 years ago by • 0
0
votes
0
replies
1.4k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
5.7 years ago agdif ▴ 10
0
votes
0
replies
937
views
PROBLEM WITH MFUZZ
mfuzz fold change log2 STANDARDISATION
5.9 years ago prakashpandey1111 • 0
0
votes
0
replies
801
views
NMF pre-processsing effect on classification
NMF log2 classification bioconductor
5.9 years ago Seymoo • 0
10 results • Page 1 of 1
Recent ...
Replies
Answer: Help with infinite recursion - non-zero exit status in installation of GenomeInf by James W. MacDonald 66k
Maybe just try again? ``` > install("GenomeInfoDbData", force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositorie…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf by Brandon • 0
Hello, As an update, I am able to install and load GenomeInfoDb successfully in a fresh renv in my WSL distro. However, I'm not sure what …
Comment: slingshot: error with plot3d.SlingshotDataSet by Kelly Street • 0
This issue has been addressed [on GitHub][1]. [1]: https://github.com/kstreet13/slingshot/issues/249
Comment: Slightly different count plots from R and spreadsheet by Michael Love 42k
Change timepoint to an integer in the data frame: ``` as.numeric(as.character( <factor> )) ``` Then it should make points instead of boxe…
Answer: WGNCA kME vs. kIM by Vitor • 0
You can compare kIM and kME within module assignments. The plot below is for my network (I used Pearson correlation and signed network). !…
Votes
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
Awards • All
Popular Question to Jenny Drnevich ★ 2.0k
Centurion to boczniak767 ▴ 720
Popular Question to abhisek001 • 0
Scholar to Mike Smith ★ 6.5k
Popular Question to mohammedtoufiq91 ▴ 10
Locations • All
United States, 1 minute ago
United States, 9 minutes ago
United States, 15 minutes ago
India, 18 minutes ago
United States, 30 minutes ago
Traffic: 662 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6