Showing : MSnbase • reset
0
votes
0
replies
664
views
News: Online course: Mass Spectrometry and Proteomics with R/Bioconductor
MSnbase
20 months ago info ▴ 10
0
votes
0
replies
852
views
Problem with "too large halfWindowSize" with writeMSdata after centroiding MSe data
MSnbase
2.7 years ago christine.wegler • 0
0
votes
2
replies
1.5k
views
Error loading package MSnbase on MacOS
MSnbase
updated 2.9 years ago by 1.6k • written 2.9 years ago by • 0
0
votes
3
replies
1.7k
views
TMT 10 plex impurity corrections
MSnbase
updated 3.6 years ago by 1.6k • written 3.6 years ago by • 0
0
votes
7
replies
5.5k
views
LFQ shiny app from DEP package reports: Error: 'imputeMethods' is not an exported object from 'namespace:MSnbase'
MSnbase MsCoreUtils DEP
updated 3.2 years ago by ★ 1.6k • written 3.7 years ago by ▴ 40
0
votes
1
reply
2.3k
views
Installation problem
MSnbase
updated 3.8 years ago by 1.6k • written 3.8 years ago by • 0
0
votes
1
reply
1.1k
views
Problem in ion intensity
MSnbase
updated 3.9 years ago by 1.6k • written 3.9 years ago by • 0
0
votes
1
reply
1.3k
views
possible problem with mzR? cannot load Msnset for proteomics analysis
MSnbase mzR Bioconductor limma
updated 4.6 years ago by 1.6k • written 4.6 years ago by • 0
0
votes
0
replies
982
views
Which package I can use?
MSnbase DAPAR DEP
5.0 years ago yueli7 ▴ 20
1
vote
1
reply
1.2k
views
Missing SCANS in writeMgfData
MSnbase
updated 5.0 years ago by 1.6k • written 5.0 years ago by ▴ 40
0
votes
4
replies
2.1k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 5.2 years ago by 1.6k • written 5.2 years ago by • 0
3
votes
2
replies
1.3k
views
readMSData and netCDF files, only TIC intensity available
MSnbase netCDF
5.4 years ago julien.kermorvant ▴ 30
8
votes
7
replies
3.0k
views
readMSData and netCDF files, how to set polarity ?
MSnbase
updated 5.4 years ago by ★ 2.1k • written 5.4 years ago by ▴ 30
2
votes
1
reply
1.4k
views
Maximum parsimony protein assembly/inference
rforproteomics proteomics msnid msnbase
5.6 years ago daniel.magnus.bader ▴ 50
3
votes
4
replies
1.5k
views
Ion Mass to Charge Search R Function with MSnbase, Data frame as mass to charge input help
MSnbase plyr
updated 5.8 years ago by 1.6k • written 5.8 years ago by ▴ 10
0
votes
5
replies
1.9k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 6.2 years ago by 1.6k • written 6.2 years ago by • 0
0
votes
8
replies
4.5k
views
Getting data into (and out of) the MSnSet object
proteomics MSnbase MSnSet readMSnSet msmsTests
updated 6.2 years ago by • 0 • written 7.8 years ago by ▴ 20
4
votes
4
replies
1.8k
views
Extracting Data from MSn experiment data ("OnDiskMSnExp")
MSnbase
updated 6.3 years ago by 1.6k • written 6.3 years ago by ▴ 20
3
votes
2
replies
1.4k
views
Access list of rtime/intensity values from chromatograms object from MSnbase
MSnbase chromatograms intensity
updated 6.3 years ago by 1.6k • written 6.3 years ago by ▴ 10
0
votes
5
replies
1.7k
views
MSnbase addIdentificationData problem
software error MSnbase
updated 6.4 years ago by 1.6k • written 6.4 years ago by • 0
2
votes
3
replies
1.4k
views
MSnbase extracting individual spectrum based on precursor ion m/z
MSnbase
updated 6.4 years ago by 1.6k • written 6.4 years ago by ▴ 30
0
votes
4
replies
3.5k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
6.6 years ago lmg • 0
0
votes
6
replies
2.7k
views
Protein quantification by MSnbase package
msnbase rforproteomics
6.7 years ago fgol ▴ 10
4
votes
5
replies
2.7k
views
How to convert a xlsx data file to MSnSet format?
msnbase msmstests proteomics lc-ms/ms msnID
updated 6.7 years ago by 1.6k • written 6.7 years ago by ▴ 10
0
votes
5
replies
2.5k
views
MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repository by pxget function
MSnbase Bioconductor PRIDE rpx PXDataset
updated 3.5 years ago by 1.6k • written 6.8 years ago by ▴ 10
0
votes
4
replies
1.6k
views
MSnset combine error message
MSnbase
6.8 years ago kamal.fartiyal84 ▴ 10
0
votes
5
replies
4.9k
views
Errors installing RforProteomics and MSnbase packages
RforProteomics MSnbase
updated 6.8 years ago by 1.6k • written 6.8 years ago by ▴ 10
3
votes
2
replies
1.9k
views
MSnbase annotate m/z values on mass spectrum plots
msnbase
updated 6.9 years ago by 1.6k • written 6.9 years ago by ▴ 30
1
vote
2
replies
1.4k
views
quantify() method for MSnExp to MSnSet for MS1 level data only
msnbase spectrum
updated 7.1 years ago by 1.6k • written 7.1 years ago by • 0
3
votes
1
reply
1.3k
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 7.2 years ago by 1.6k • written 7.2 years ago by • 0
1
vote
2
replies
2.1k
views
Label free quantification post FDR calculation for MS/MS Proteomics
mzid msnbase mzr
updated 7.5 years ago by 1.6k • written 7.5 years ago by ▴ 10
0
votes
2
replies
1.4k
views
How to manipulate assayData in MSnSetList
msnbase
7.6 years ago kamal.fartiyal84 ▴ 10
2
votes
4
replies
2.0k
views
calling combineFeatures twice causes duplicate row.names
msnbase duplicate rforproteomics
updated 7.8 years ago by 1.6k • written 7.8 years ago by ▴ 10
0
votes
6
replies
2.7k
views
Combining two MSnSet
msnbase
8.1 years ago • updated 7.8 years ago kamal.fartiyal84 ▴ 10
0
votes
1
reply
1.3k
views
Adding Identification Data to MSnbase MSn Experiment
MSnbase
8.1 years ago lau1 • 0
0
votes
4
replies
2.7k
views
Missing value imputation
msnbase
8.3 years ago kamal.fartiyal84 ▴ 10
0
votes
14
replies
3.4k
views
Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to build the Proteins database
pbase MsnId mzid msnbase
updated 9.6 years ago by ▴ 80 • written 9.7 years ago by • 0
0
votes
2
replies
5.0k
views
Error: package or namespace load failed for ‘MSnbase’
MSnbase
updated 9.7 years ago by 1.6k • written 9.7 years ago by • 0
4
votes
15
replies
4.2k
views
Converting Synapter object output into a MSnbase-compatible object
synapter msnbase
10.2 years ago • updated 10.1 years ago diana.schreier • 0
1
vote
9
replies
3.2k
views
msnbase error when adding identification data
msnbase proteomics itraq
updated 10.8 years ago by 1.6k • written 10.8 years ago by • 0
40 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts by empty_mt • 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions by Michael Love 43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Votes
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
Awards • All
Popular Question to Ou, Jianhong ★ 1.3k
Popular Question to Maria Doyle ▴ 100
Popular Question to Gordon Smyth 53k
Oracle to shepherl 4.2k
Popular Question to Matej • 0
Locations • All
The city by the bay, 14 minutes ago
United States, 1 hour ago
San Diego, 2 hours ago
WEHI, Melbourne, Australia, 3 hours ago
WEHI, Melbourne, Australia, 3 hours ago
Traffic: 1691 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6