Showing : MSnbase • reset
0
votes
0
replies
420
views
News: Online course: Mass Spectrometry and Proteomics with R/Bioconductor
MSnbase
8 months ago info ▴ 10
0
votes
0
replies
594
views
Problem with "too large halfWindowSize" with writeMSdata after centroiding MSe data
MSnbase
21 months ago christine.wegler • 0
0
votes
2
replies
1.3k
views
Error loading package MSnbase on MacOS
MSnbase
updated 2.0 years ago by 1.6k • written 2.0 years ago by • 0
0
votes
3
replies
1.3k
views
TMT 10 plex impurity corrections
MSnbase
updated 2.7 years ago by 1.6k • written 2.7 years ago by • 0
0
votes
7
replies
4.3k
views
LFQ shiny app from DEP package reports: Error: 'imputeMethods' is not an exported object from 'namespace:MSnbase'
MSnbase MsCoreUtils DEP
updated 2.3 years ago by ★ 1.6k • written 2.7 years ago by ▴ 40
0
votes
1
reply
1.8k
views
Installation problem
MSnbase
updated 2.9 years ago by 1.6k • written 2.9 years ago by • 0
0
votes
1
reply
896
views
Problem in ion intensity
MSnbase
updated 2.9 years ago by 1.6k • written 2.9 years ago by • 0
0
votes
1
reply
1.0k
views
possible problem with mzR? cannot load Msnset for proteomics analysis
MSnbase mzR Bioconductor limma
updated 3.7 years ago by 1.6k • written 3.7 years ago by • 0
0
votes
0
replies
792
views
Which package I can use?
MSnbase DAPAR DEP
4.0 years ago yueli7 ▴ 20
1
vote
1
reply
1.0k
views
Missing SCANS in writeMgfData
MSnbase
updated 4.0 years ago by 1.6k • written 4.1 years ago by ▴ 40
0
votes
4
replies
1.7k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 4.3 years ago by 1.6k • written 4.3 years ago by • 0
3
votes
2
replies
1.0k
views
readMSData and netCDF files, only TIC intensity available
MSnbase netCDF
4.5 years ago julien.kermorvant ▴ 30
8
votes
7
replies
2.5k
views
readMSData and netCDF files, how to set polarity ?
MSnbase
updated 4.5 years ago by ★ 2.1k • written 4.5 years ago by ▴ 30
2
votes
1
reply
1.1k
views
Maximum parsimony protein assembly/inference
rforproteomics proteomics msnid msnbase
4.6 years ago daniel.magnus.bader ▴ 50
3
votes
4
replies
1.2k
views
Ion Mass to Charge Search R Function with MSnbase, Data frame as mass to charge input help
MSnbase plyr
updated 4.8 years ago by 1.6k • written 4.8 years ago by ▴ 10
0
votes
5
replies
1.5k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 5.2 years ago by 1.6k • written 5.2 years ago by • 0
0
votes
8
replies
3.8k
views
Getting data into (and out of) the MSnSet object
proteomics MSnbase MSnSet readMSnSet msmsTests
updated 5.3 years ago by • 0 • written 6.8 years ago by ▴ 20
4
votes
4
replies
1.4k
views
Extracting Data from MSn experiment data ("OnDiskMSnExp")
MSnbase
updated 5.3 years ago by 1.6k • written 5.3 years ago by ▴ 20
3
votes
2
replies
1.1k
views
Access list of rtime/intensity values from chromatograms object from MSnbase
MSnbase chromatograms intensity
updated 5.3 years ago by 1.6k • written 5.3 years ago by ▴ 10
0
votes
5
replies
1.4k
views
MSnbase addIdentificationData problem
software error MSnbase
updated 5.4 years ago by 1.6k • written 5.4 years ago by • 0
2
votes
3
replies
1.1k
views
MSnbase extracting individual spectrum based on precursor ion m/z
MSnbase
updated 5.4 years ago by 1.6k • written 5.4 years ago by ▴ 30
0
votes
4
replies
3.1k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.7 years ago lmg • 0
0
votes
6
replies
2.2k
views
Protein quantification by MSnbase package
msnbase rforproteomics
5.8 years ago • updated 5.7 years ago fgol ▴ 10
4
votes
5
replies
2.3k
views
How to convert a xlsx data file to MSnSet format?
msnbase msmstests proteomics lc-ms/ms msnID
updated 5.8 years ago by 1.6k • written 5.8 years ago by ▴ 10
0
votes
5
replies
2.1k
views
MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repository by pxget function
MSnbase Bioconductor PRIDE rpx PXDataset
updated 2.5 years ago by 1.6k • written 5.8 years ago by ▴ 10
0
votes
4
replies
1.3k
views
MSnset combine error message
MSnbase
5.9 years ago kamal.fartiyal84 ▴ 10
0
votes
5
replies
4.3k
views
Errors installing RforProteomics and MSnbase packages
RforProteomics MSnbase
updated 5.9 years ago by 1.6k • written 5.9 years ago by ▴ 10
3
votes
2
replies
1.4k
views
MSnbase annotate m/z values on mass spectrum plots
msnbase
updated 5.9 years ago by 1.6k • written 5.9 years ago by ▴ 30
1
vote
2
replies
1.1k
views
quantify() method for MSnExp to MSnSet for MS1 level data only
msnbase spectrum
updated 6.2 years ago by 1.6k • written 6.2 years ago by • 0
3
votes
1
reply
1.1k
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 6.3 years ago by 1.6k • written 6.3 years ago by • 0
1
vote
2
replies
1.7k
views
Label free quantification post FDR calculation for MS/MS Proteomics
mzid msnbase mzr
updated 6.5 years ago by 1.6k • written 6.5 years ago by ▴ 10
0
votes
2
replies
1.2k
views
How to manipulate assayData in MSnSetList
msnbase
6.6 years ago kamal.fartiyal84 ▴ 10
2
votes
4
replies
1.7k
views
calling combineFeatures twice causes duplicate row.names
msnbase duplicate rforproteomics
updated 6.8 years ago by 1.6k • written 6.8 years ago by ▴ 10
0
votes
6
replies
2.3k
views
Combining two MSnSet
msnbase
7.2 years ago • updated 6.8 years ago kamal.fartiyal84 ▴ 10
0
votes
1
reply
1.1k
views
Adding Identification Data to MSnbase MSn Experiment
MSnbase
7.1 years ago lau1 • 0
0
votes
4
replies
2.2k
views
Missing value imputation
msnbase
7.3 years ago kamal.fartiyal84 ▴ 10
0
votes
14
replies
2.8k
views
Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to build the Proteins database
pbase MsnId mzid msnbase
updated 8.7 years ago by ▴ 80 • written 8.8 years ago by • 0
0
votes
2
replies
4.7k
views
Error: package or namespace load failed for ‘MSnbase’
MSnbase
updated 8.7 years ago by 1.6k • written 8.7 years ago by • 0
4
votes
15
replies
3.5k
views
Converting Synapter object output into a MSnbase-compatible object
synapter msnbase
9.3 years ago • updated 9.2 years ago diana.schreier • 0
1
vote
9
replies
2.7k
views
msnbase error when adding identification data
msnbase proteomics itraq
updated 9.9 years ago by 1.6k • written 9.9 years ago by • 0
40 results • Page 1 of 1
Recent ...
Replies
Answer: Downloading Metagenomic Data with Higher Taxonomic Units by Levi Waldron ★ 1.1k
I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Votes
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Awards • All
Popular Question to Talip Zengin ▴ 10
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Scholar to James W. MacDonald 67k
Locations • All
France, 3 minutes ago
Germany, 25 minutes ago
The Netherlands, 28 minutes ago
Chile, 34 minutes ago
Switzerland, 38 minutes ago
Traffic: 924 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6