Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
MethylationArray
•
reset
0
votes
0
replies
139
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray
normalize450K
TCGAbiolinks
Normalization
MethylationArrayData
7 weeks ago • updated 5 weeks ago
Giovanni Calice
▴ 160
0
votes
1
reply
238
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 7 weeks ago by
belinda.phipson
▴ 40 • written 7 weeks ago by
s.malik
• 0
0
votes
11
replies
702
views
Strange logFC values in differential methylation site anslysis
edgeR
MethylationArray
updated 7 weeks ago by
Gordon Smyth
50k • written 8 weeks ago by
mico
• 0
1
vote
0
replies
158
views
Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k
MethylationArray
TCGAbiolinks
Tcga
TCGAbiolinksGUI.data
8 weeks ago
BioinfoMug
• 0
1
vote
6
replies
456
views
Library size normalization in methylation count analysis
edgeR
MethylationArray
8 weeks ago
mico
• 0
1
vote
1
reply
272
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray
methylationArrayAnalysis
ChAMP
updated 9 weeks ago by
James W. MacDonald
65k • written 9 weeks ago by
david.cheishvili
• 0
0
votes
7
replies
430
views
error in reading idat files and creating rgset
minfi
MethylationArray
updated 10 weeks ago by
James W. MacDonald
65k • written 10 weeks ago by
sharangiiv
• 0
1
vote
2
replies
307
views
How to get normalized values for methylation counts in edgeR
edgeR
MethylationArray
11 weeks ago
mico
• 0
1
vote
4
replies
443
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
11 weeks ago
mikat
• 0
0
votes
1
reply
719
views
EPIC v2 demo data from blood samples
MethylationArray
methylationArrayAnalysis
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
henry-keen
• 0
5
votes
5
replies
781
views
limma output for epic array methylation data
linearregression
epicarray
MethylationArray
limma
8 months ago
Jitendra
▴ 10
1
vote
1
reply
552
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis
topGO
missMethyl
MethylationArrayData
MethylationArray
updated 12 months ago by
belinda.phipson
▴ 40 • written 12 months ago by
Grace
• 0
2
votes
6
replies
1.1k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 12 months ago by
Tim Peters
▴ 170 • written 12 months ago by
Grace
• 0
0
votes
1
reply
536
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis
minfi
MethylationArrayData
minfiDataEPIC
MethylationArray
updated 12 months ago by
Gordon Smyth
50k • written 13 months ago by
Grace
• 0
0
votes
4
replies
1.0k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Grace
• 0
0
votes
5
replies
1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 13 months ago by
Grace
• 0
2
votes
1
reply
649
views
Limma model orientation
limma
methylation
MethylationArray
updated 24 months ago by
James W. MacDonald
65k • written 24 months ago by
fluentin44
• 0
2
votes
2
replies
1.2k
views
Limma vs. lm for methylation data
limma
MethylationArrayData
MethylationArray
2.1 years ago • updated 2.0 years ago
fluentin44
• 0
0
votes
0
replies
960
views
Surrogate variable, celltype composition correction and overfitting in DNA methylation data
sva
limma
methylation
MethylationArray
3.3 years ago
epibio
▴ 10
6
votes
6
replies
1.5k
views
Limma Paired Analysis - Force intercept to 0
MethylationArray
limma
3.3 years ago • updated 3.2 years ago
MoltenLight
▴ 10
2
votes
7
replies
2.4k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray
methylationArrayAnalysis
ChAMP
updated 6 months ago by
dorota.komar
• 0 • written 3.4 years ago by
Ankit
▴ 20
0
votes
0
replies
613
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
3.4 years ago
coobzie
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards
• All
Popular Question
to
shepherl
3.8k
Popular Question
to
James W. MacDonald
65k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Locations
• All
France,
2 minutes ago
Canada,
3 minutes ago
Canada,
15 minutes ago
United States,
24 minutes ago
Ireland,
1 hour ago
Traffic: 938 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6