Showing : OrgDB • reset
0
votes
5
replies
324
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
updated 24 days ago by 65k • written 27 days ago by • 0
2
votes
2
replies
216
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 29 days ago by 65k • written 29 days ago by • 0
2
votes
1
reply
232
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
updated 7 weeks ago by ★ 4.0k • written 8 weeks ago by ▴ 10
1
vote
3
replies
477
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 6 months ago by 65k • written 6 months ago by • 0
2
votes
4
replies
559
views
Need help generating BSgenome and orgdb
OrgDb BSgenome
6 months ago • updated 3 months ago mat149 ▴ 70
0
votes
0
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1.7k
views
Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
OrgDb
16 months ago hswdl • 0
0
votes
4
replies
1.4k
views
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
OrgDb
17 months ago hendrikwenneker • 0
1
vote
7
replies
1.5k
views
Adding geneID to list of gene locus IDs
cluster OrgDb clusterProfiler
written 18 months ago by • 0
1
vote
9
replies
1.5k
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion OrgDb clusterProfiler
18 months ago MK • 0
0
votes
1
reply
694
views
Share Annotation Packages
OrgDb AnnotationDbi
updated 19 months ago by 3.9k • written 19 months ago by • 0
0
votes
1
reply
1.2k
views
Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb RNASeq
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
0
votes
7
replies
4.4k
views
how to create an OrgDb package?
orgDb annotationForge
updated 2.1 years ago by • 0 • written 2.6 years ago by • 0
1
vote
2
replies
1.4k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 3.0 years ago by ★ 4.0k • written 3.0 years ago by • 0
0
votes
0
replies
873
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
3.1 years ago Thomas.H.Hampton • 0
2
votes
3
replies
1.7k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 3.3 years ago by 65k • written 3.3 years ago by ▴ 30
0
votes
2
replies
1.4k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 3.8 years ago by 65k • written 3.8 years ago by ★ 2.0k
3
votes
6
replies
2.3k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 22 months ago by 3.9k • written 4.0 years ago by ★ 2.0k
0
votes
34
replies
8.5k
views
Error: installation of package org.Mm.eg.db had non-zero exit status
OrgDb
updated 4.1 years ago by • 0 • written 4.6 years ago by • 0
7
votes
44
replies
5.5k
views
OrgDB download failed via AnnotationHub
annotationhub orgdb
updated 4.9 years ago by 3.9k • written 4.9 years ago by • 0
3
votes
6
replies
1.9k
views
How to create a customized OrgDb in order to perform kegga analysis?
limma kegga orgdb
updated 6.2 years ago by 50k • written 6.2 years ago by • 0
0
votes
1
reply
1.4k
views
News: OrgDbs in AnnotationHub
annotationhub orgdb News
6.5 years ago shepherl 3.9k
0
votes
0
replies
1.3k
views
News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb txdb bioconductor annotation annotationhub News
6.6 years ago shepherl 3.9k
0
votes
6
replies
1.6k
views
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb annotationhub
6.8 years ago slbai01 • 0
0
votes
2
replies
2.0k
views
add annotation features to BSgenome or txdb package
bsgenome txdb annotation orgdb
6.8 years ago Didi ▴ 10
1
vote
0
replies
1.2k
views
News: complete set of OrgDb packages have been added to AnnotationHub
bioconductor annotationhub orgdb News
6.9 years ago shepherl 3.9k
0
votes
4
replies
1.4k
views
Annotation Hub object no longer present
Orgdb
7.5 years ago • updated 7.4 years ago anamabrantesc • 0
2
votes
12
replies
2.3k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation orgdb
8.3 years ago knishida ▴ 20
3
votes
13
replies
2.7k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub organismdb orgdb unsupported organisms
updated 8.3 years ago by ★ 6.8k • written 8.3 years ago by ★ 4.0k
0
votes
5
replies
1.8k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub orgdb
updated 8.5 years ago by ★ 6.8k • written 8.5 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
10.9 years ago Chris Whelan ▴ 60
0
votes
6
replies
1.5k
views
Creating an OrganismDbi package with a few transcript annotations
OrgDb OrganismDbi OrgDb OrganismDbi
updated 11.0 years ago by 25k • written 11.0 years ago by ★ 11k
0
votes
1
reply
1.7k
views
problem creating own org.Ss.eg.db
Annotation GO Organism OrgDb Annotation GO Organism OrgDb
updated 12.2 years ago by ★ 4.0k • written 12.2 years ago by ★ 7.2k
32 results • Page 1 of 1
Recent ...
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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