Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
annotationForge
•
reset
0
votes
8
replies
276
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
29 days ago • updated 27 days ago
Saber_J
• 0
3
votes
2
replies
776
views
Install package without updating dependent package
Install
AnnotationForge
5 months ago
亮
• 0
0
votes
7
replies
589
views
how to create an OrgDb package?
orgDb
annotationForge
updated 6 weeks ago by
pengxinyang12
• 0 • written 7 months ago by
Haibo Liu
• 0
1
vote
5
replies
496
views
Gene ID conversion for pathway enrichment analysis of differentially expressed genes
GeneIDConversion
AnnotationForge
updated 13 months ago by
Guido Hooiveld
★ 3.2k • written 14 months ago by
AbhilashKumar.Tripathi
• 0
0
votes
3
replies
413
views
AnnotationForge: makeOrgPackageFromNCBI Error in function (type, msg, asError = TRUE) : FTP response timeout
AnnotationForge
updated 14 months ago by
Kevin Blighe
3.5k • written 14 months ago by
Imad
• 0
2
votes
4
replies
355
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 2.0 years ago by
James W. MacDonald
59k • written 2.0 years ago by
chefer
• 0
4
votes
5
replies
769
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error
AnnotationForge
AnnotationDbi
updated 2.0 years ago by
James W. MacDonald
59k • written 2.0 years ago by
jdiaz
• 0
3
votes
3
replies
245
views
AnnotationForge run by three days and do not end
annotation
AnnotationForge
2.1 years ago
Marcelo Laia
▴ 450
1
vote
1
reply
531
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu
GOSemSim
AnnotationForge
updated 2.1 years ago by
Kevin Blighe
3.5k • written 2.1 years ago by
Cei
• 0
0
votes
4
replies
288
views
AnnotationForge not working for building custom org packages
AnnotationForge
Marc Carlson
Hervé Pagès
updated 2.1 years ago by
James W. MacDonald
59k • written 2.1 years ago by
Cei
• 0
0
votes
6
replies
355
views
Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge
makeOrgPackageFromNCBI
gene ontology
edgeR
pathwayanalysis
updated 2.2 years ago by
James W. MacDonald
59k • written 2.2 years ago by
babak.loghmani
• 0
0
votes
2
replies
348
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge
makeOrgPackageFromNCBI
updated 2.3 years ago by
James W. MacDonald
59k • written 2.3 years ago by
lesneski
• 0
0
votes
2
replies
268
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error
go
AnnotationForge
AnnotationDbi
updated 2.3 years ago by
James W. MacDonald
59k • written 2.3 years ago by
tzaquin
• 0
0
votes
0
replies
547
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO
AnnotationForge
3.2 years ago
psutton
• 0
0
votes
7
replies
850
views
go_bp table in custom OrgDb package
annotation
go
pcaExplorer
AnnotationForge
updated 3.2 years ago by
James W. MacDonald
59k • written 3.2 years ago by
psutton
• 0
1
vote
7
replies
628
views
Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge
updated 3.7 years ago by
James W. MacDonald
59k • written 3.7 years ago by
sbbinfo90
• 0
1
vote
3
replies
632
views
makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge
updated 3.8 years ago by
James W. MacDonald
59k • written 3.8 years ago by
lukeholman
• 0
1
vote
3
replies
807
views
Running GO analysis via Prostar
prostar
proteomics
rforproteomics
annotationforge
updated 4.0 years ago by
Samuel Wieczorek
▴ 10 • written 4.0 years ago by
lolli.langan
▴ 20
2
votes
2
replies
601
views
Queries around makeOrgPackageFromNCBI
R
software error
annotationforge
updated 4.1 years ago by
Guido Hooiveld
★ 3.2k • written 4.1 years ago by
laural710
• 0
0
votes
1
reply
765
views
AnnotationForge, RNAseq, and non-model organism
AnnotationForge
annotationforge
nonmodel
rnaseq
updated 4.4 years ago by
James W. MacDonald
59k • written 4.4 years ago by
mlpimsler
• 0
2
votes
3
replies
1.2k
views
custom annotation for GO enrichment
annotationforge
GSEA
clusterprofiler
GO
annotation
4.8 years ago
cabezasdelafuented
▴ 10
0
votes
10
replies
793
views
Error during makeOrgPackageFromNCBI
annotationforge
makeorgpackagefromncbi
4.9 years ago • updated 4.8 years ago
gabciamm
• 0
0
votes
1
reply
1.2k
views
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge
makeorgpackage
4.9 years ago
marisa.e.miller
• 0
3
votes
7
replies
1.4k
views
makeOrgPackage in AnnotationForge "GID" problem
annotationforge
updated 5.1 years ago by
James W. MacDonald
59k • written 5.1 years ago by
samanthapizi
• 0
0
votes
0
replies
745
views
create custom 'System Biology' annotation package - class not found
AnnotationDb
annotationdbi
AnnotationForge
5.3 years ago
Laure Cougnaud
▴ 20
3
votes
6
replies
1.8k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation
microarray
annotate
annotationforge
5.3 years ago
MOD
• 0
0
votes
12
replies
2.7k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub
AnnotationDbi
AnnotationForge
pathview
updated 5.3 years ago by
Valerie Obenchain
★ 6.7k • written 5.3 years ago by
Jenny Drnevich
★ 2.0k
1
vote
22
replies
2.8k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor
R
annotationforge
updated 5.4 years ago by
theobroma22
▴ 10 • written 5.8 years ago by
wssdandan2009
• 0
0
votes
3
replies
735
views
error while making database using Annotationforge package
annotationforge
error
database
updated 5.8 years ago by
Guido Hooiveld
★ 3.2k • written 5.8 years ago by
kritikamish99
▴ 10
5
votes
22
replies
4.3k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor
annotationforge
annotationdbi
annotation
r
updated 5.9 years ago by
Axel Klenk
▴ 990 • written 7.3 years ago by
Stephen H
• 0
1
vote
4
replies
1.8k
views
AnnotationForge failed due to "Parameter 0 does not have length 1"
AnnotationForge
updated 6.4 years ago by
Valerie Obenchain
★ 6.7k • written 6.4 years ago by
zhilongjia
• 0
0
votes
1
reply
699
views
errors for makeOrgPackageFromNCBI in AnnotationForge
AnnotationForge
updated 6.5 years ago by
Hervé Pagès
15k • written 6.5 years ago by
songeric1107
• 0
0
votes
2
replies
1.0k
views
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation
annotationforge
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
chiapello.m
• 0
0
votes
2
replies
819
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge
makeorgpackage
go
6.9 years ago
Keith Hughitt
▴ 150
0
votes
5
replies
1.4k
views
Error during makeOrgPackageFromNCBI
annotation
annotationforge
annotationdbi
makeorgpackagefromncbi
7.3 years ago
oliver.tills
• 0
0
votes
4
replies
1.7k
views
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 7.6 years ago by
Marc Carlson
★ 7.2k • written 7.7 years ago by
Simon Anders
★ 3.7k
1
vote
2
replies
1.4k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb
annotationdbi
annotationforge
updated 7.7 years ago by
Marc Carlson
★ 7.2k • written 7.7 years ago by
artur
▴ 80
3
votes
9
replies
1.9k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
7.7 years ago
artur
▴ 80
3
votes
3
replies
6.9k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge
Annotation
GO
updated 7.7 years ago by
Marc Carlson
★ 7.2k • written 7.7 years ago by
artur
▴ 80
0
votes
0
replies
805
views
Failure to Install Organism Package from AnnotationForge
Organism
AnnotationDbi
AnnotationForge
Organism
AnnotationDbi
AnnotationForge
8.3 years ago
Guest User
★ 12k
1
vote
1
reply
1.5k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation
Organism
zebrafish
cdf
affy
AnnotationForge
Annotation
Organism
zebrafish
cdf
updated 8.6 years ago by
James W. MacDonald
59k • written 8.6 years ago by
Joao Sollari Lopes
▴ 80
0
votes
1
reply
1.1k
views
Error using makeDBPackage() from AnnotationForge package
Annotation
probe
AnnotationForge
Annotation
probe
AnnotationForge
updated 8.7 years ago by
Marc Carlson
★ 7.2k • written 8.7 years ago by
gabriel teku
▴ 80
1
vote
3
replies
1.1k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment
Annotation
Organism
Schizosaccharomyces pombe
biomaRt
AnnotationForge
Alignment
updated 8.7 years ago by
Marc Carlson
★ 7.2k • written 8.8 years ago by
Marco Blanchette
▴ 220
0
votes
1
reply
751
views
答复: an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
8.8 years ago
joseph
▴ 40
0
votes
1
reply
699
views
an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
updated 8.8 years ago by
Marc Carlson
★ 7.2k • written 8.8 years ago by
joseph
▴ 40
0
votes
1
reply
1.2k
views
nsFilter error in genefilter
GO
hgu133plus2
cdf
GSVA
AnnotationForge
GO
hgu133plus2
cdf
GSVA
AnnotationForge
updated 8.9 years ago by
James W. MacDonald
59k • written 8.9 years ago by
steven wink
▴ 90
0
votes
12
replies
3.1k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray
GO
oligo
AnnotationForge
Microarray
GO
oligo
AnnotationForge
9.3 years ago
James W. MacDonald
59k
47 results • Page
1 of 1
Recent ...
Replies
Answer: RPX PXDataset error
by
Laurent Gatto
1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue
by
shepherl
3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Answer: Package name already exists due to previous issue
by
James W. MacDonald
59k
You should probably send this question to bioc-devel@r-project.org
Comment: edgeR - how to convert DGELRT and other classes to .csv files
by
Benjamin
• 0
Thank you Aaron. I am wondering if you know how to write the .csv file with both the topTags (statistical analysis) and the original counts…
Answer: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
by
James W. MacDonald
59k
That's a very old build, and an old version of the GFF standard. You would be better off getting something more recent. ``` > txdb <- m…
Votes
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
Awards
• All
Teacher
to
Aaron Lun
★ 27k
Scholar
to
James W. MacDonald
59k
Popular Question
to
Lluís Revilla Sancho
▴ 660
Centurion
to
Basti
▴ 280
Scholar
to
Robert Castelo
★ 2.9k
Locations
• All
United States,
just now
Canada,
5 minutes ago
Germany,
8 minutes ago
United States,
9 minutes ago
Switzerland,
10 minutes ago
Traffic: 432 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6