Showing : orgDb • reset
1
vote
3
replies
242
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 27 days ago by 64k • written 4 weeks ago by • 0
3
votes
2
replies
237
views
Need help generating BSgenome and orgdb
OrgDb BSgenome
updated 6 weeks ago by 16k • written 7 weeks ago by ▴ 70
0
votes
0
replies
1.3k
views
Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
OrgDb
11 months ago hswdl • 0
1
vote
7
replies
1.1k
views
Adding geneID to list of gene locus IDs
cluster OrgDb clusterProfiler
written 12 months ago by • 0
0
votes
4
replies
937
views
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
OrgDb
12 months ago hendrikwenneker • 0
1
vote
9
replies
1.1k
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion OrgDb clusterProfiler
13 months ago MK • 0
0
votes
1
reply
536
views
Share Annotation Packages
OrgDb AnnotationDbi
updated 14 months ago by 3.6k • written 14 months ago by • 0
0
votes
1
reply
959
views
Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb RNASeq
updated 22 months ago by 64k • written 22 months ago by • 0
0
votes
7
replies
3.6k
views
how to create an OrgDb package?
orgDb annotationForge
updated 20 months ago by • 0 • written 2.1 years ago by • 0
1
vote
2
replies
1.2k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 2.6 years ago by ★ 3.8k • written 2.6 years ago by • 0
0
votes
0
replies
688
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
2.6 years ago Thomas.H.Hampton • 0
2
votes
3
replies
1.4k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 2.9 years ago by 64k • written 2.9 years ago by ▴ 20
0
votes
2
replies
1.1k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 3.4 years ago by 64k • written 3.4 years ago by ★ 2.0k
3
votes
6
replies
1.9k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 16 months ago by 3.6k • written 3.6 years ago by ★ 2.0k
0
votes
34
replies
7.6k
views
Error: installation of package org.Mm.eg.db had non-zero exit status
OrgDb
updated 3.7 years ago by • 0 • written 4.1 years ago by • 0
7
votes
44
replies
4.7k
views
OrgDB download failed via AnnotationHub
annotationhub orgdb
updated 4.4 years ago by 3.6k • written 4.5 years ago by • 0
3
votes
6
replies
1.7k
views
How to create a customized OrgDb in order to perform kegga analysis?
limma kegga orgdb
updated 5.8 years ago by 49k • written 5.8 years ago by • 0
0
votes
1
reply
1.3k
views
News: OrgDbs in AnnotationHub
annotationhub orgdb News
6.1 years ago shepherl 3.6k
0
votes
0
replies
1.2k
views
News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb txdb bioconductor annotation annotationhub News
6.1 years ago shepherl 3.6k
0
votes
6
replies
1.4k
views
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb annotationhub
6.3 years ago slbai01 • 0
0
votes
2
replies
1.8k
views
add annotation features to BSgenome or txdb package
bsgenome txdb annotation orgdb
6.4 years ago Didi ▴ 10
1
vote
0
replies
1.1k
views
News: complete set of OrgDb packages have been added to AnnotationHub
bioconductor annotationhub orgdb News
6.5 years ago shepherl 3.6k
0
votes
4
replies
1.2k
views
Annotation Hub object no longer present
Orgdb
7.0 years ago anamabrantesc • 0
2
votes
12
replies
2.1k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation orgdb
7.8 years ago knishida ▴ 20
3
votes
13
replies
2.4k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub organismdb orgdb unsupported organisms
updated 7.9 years ago by ★ 6.8k • written 7.9 years ago by ★ 3.8k
0
votes
5
replies
1.6k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub orgdb
updated 8.1 years ago by ★ 6.8k • written 8.1 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
10.5 years ago Chris Whelan ▴ 60
0
votes
6
replies
1.3k
views
Creating an OrganismDbi package with a few transcript annotations
OrgDb OrganismDbi OrgDb OrganismDbi
updated 10.6 years ago by 25k • written 10.6 years ago by 11k
0
votes
1
reply
1.5k
views
problem creating own org.Ss.eg.db
Annotation GO Organism OrgDb Annotation GO Organism OrgDb
updated 11.8 years ago by ★ 3.8k • written 11.8 years ago by ★ 7.2k
29 results • Page 1 of 1
Recent ...
Replies
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE) by James W. MacDonald 64k
There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k
Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0
yes i turned it off @mikelove
Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B by Mike Smith ★ 6.2k
It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k
I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…
Votes
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Awards • All
Popular Question to Assa Yeroslaviz ★ 1.5k
Scholar to Gordon Smyth 49k
Popular Question to Lluís Revilla Sancho ▴ 720
Popular Question to Frederik Ziebell ▴ 20
Popular Question to Sam ▴ 10
Locations • All
UPF, Barcelona, Spain, just now
United States, 3 minutes ago
Jerusalem, 5 minutes ago
EMBL Heidelberg, 15 minutes ago
United States, 20 minutes ago
Traffic: 1009 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6