Bioconductor Outliers

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630

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DESeq2 cooks outliers

updated 14 months ago by ATpoint ★ 4.1k • written 14 months ago by Michael • 0

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990

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maxcooks outliers zero counts DESeq2

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by andreia ▴ 10

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1.0k

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rlog DESeq2 vst outliers

2.3 years ago Bex • 0

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6.9k

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RNASeqData DESeq2 Outliers

3.0 years ago paty ▴ 60

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743

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outliers Deseq2

3.1 years ago nolwenn • 0

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2.0k

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deseq2 outliers cooks cooks distance

updated 3.7 years ago by Michael Love 41k • written 3.7 years ago by donnenfieldjonah • 0

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1.9k

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deseq2 deseq rnaseq outliers count outliers

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by lefeverde ▴ 10

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1.7k

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deseq2 differential gene expression outliers

updated 5.8 years ago by Ryan C. Thompson ★ 7.9k • written 5.8 years ago by CE ▴ 20

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1.4k

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Deseq2 outliers cookscutoff

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by jaime.alvarez.benayas • 0

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1.1k

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minfi normalization outliers dna methylation densityplot

5.8 years ago peter.fransquet • 0

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854

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deseq2 outliers

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by Moose123 • 0

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1.5k

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deseq2 outliers version

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by aec ▴ 90

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1.4k

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zero counts deseq2 odd results outliers

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by aec ▴ 90

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1.3k

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outliers deseq2 logfoldchange

6.3 years ago lirongrossmann ▴ 80

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17k

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deseq2 outliers

6.4 years ago paul.alto ▴ 50

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5.2k

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deseq2 filtering outliers count outliers

updated 6.7 years ago by Wolfgang Huber ★ 13k • written 6.7 years ago by heikki.sarin ▴ 10

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2.4k

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deseq2 combat outliers NMF

updated 6.9 years ago by Michael Love 41k • written 6.9 years ago by noname • 0

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1.3k

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outliers rna microarray

updated 7.0 years ago by chris86 ▴ 420 • written 7.0 years ago by bhgyu ▴ 30

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3.1k

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deseq2 outliers RNAseq differential gene expression

7.1 years ago cajawe • 0

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1.7k

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deseq2 outliers differential gene expression

updated 7.3 years ago by Michael Love 41k • written 7.3 years ago by gregory.l.stone ▴ 10

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3.6k

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deseq2 differential gene expression outliers bioconductor

updated 7.3 years ago by Michael Love 41k • written 7.3 years ago by gregory.l.stone ▴ 10

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1.1k

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deseq2 deseq outliers

updated 7.8 years ago by Michael Love 41k • written 7.8 years ago by akaever ▴ 30

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1.6k

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microarray PCA outliers sample outliers limma

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by serpalma.v ▴ 60

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2.2k

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pscl outliers

updated 9.1 years ago by Sean Davis 21k • written 9.1 years ago by mrk.carty ▴ 30

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14k

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WGCNA Sample Size Outliers

updated 8.7 years ago by mh.manoj • 0 • written 9.2 years ago by brohawndg ▴ 150

25 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k