Bioconductor Protein

Showing : Protein • reset

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1.3k

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biostrings iranges sequence alignment protein

updated 7.2 years ago by Michael Lawrence ★ 11k • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k

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replies

1.2k

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Gviz protein visualization UcscTrack protein domains

updated 3.6 years ago by James W. MacDonald 65k • written 3.6 years ago by paul.jaschke ▴ 10

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2.1k

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biostrings fasta protein

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by fastabest • 0

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893

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microarray protein analysis ProteomeProfiler

updated 4.1 years ago by Gordon Smyth 50k • written 4.1 years ago by hcnbox • 0

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2.2k

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xcms convert protein

updated 7.4 years ago by Johannes Rainer ★ 2.0k • written 7.4 years ago by ray.bacala • 0

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983

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protein disease pathway analysis pathways

5.8 years ago ረ • 0

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822

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Protein iranges sequencing

5.1 years ago ieuangw • 0

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2.5k

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STRINGdb R protein

updated 4.9 years ago by zhanghongjie000 • 0 • written 5.1 years ago by shahroze786 • 0

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1.1k

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microarray normalization protein

updated 3.5 years ago by Wolfgang Huber ★ 13k • written 4.9 years ago by keniajin • 0

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1.7k

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protein vcf

9.0 years ago dan.gatti • 0

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461

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protein database glutathionylation PTM

2.8 years ago Camelia • 0

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1.4k

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iranges biostrings fasta protein readaastringset

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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bioinformatics protein variantannotation data integration Job

7.5 years ago stephan.pabinger • 0

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921

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R blast blastsequences protein

6.3 years ago andres.susrud • 0

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1.1k

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dnaseq pathway analysis protein biomarkers

6.2 years ago emadelhewihy • 0

15 results • Page 1 of 1

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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Votes

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Awards • All

Popular Question to James W. MacDonald 65k

Scholar to Michael Love 41k

Supporter to JKim • 0